KEGG   Streptomyces avermitilis: SAVERM_5465
Entry
SAVERM_5465       CDS       T00126                                 
Name
(GenBank) hypothetical protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_5465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sma03019]
    SAVERM_5465
   03009 Ribosome biogenesis [BR:sma03009]
    SAVERM_5465
Enzymes [BR:sma01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SAVERM_5465
Messenger RNA biogenesis [BR:sma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SAVERM_5465
Ribosome biogenesis [BR:sma03009]
 Prokaryotic type
  rRNA processing factors
   SAVERM_5465
SSDB
Motif
Pfam: RNase_E_G DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: BAC73177
NITE: SAV5465
UniProt: Q82C89
Position
6631806..6635969
AA seq 1387 aa
MLEPIEPTEGSDNNTPSDTLPPRRRRRAASRPAGPPAAVAETATGATAPAEAAAETTAPI
TRPADIAETAEDAEAAEAAGTEETEEAAVAEPAEVAAATEDAAPRRTRRRATRRVSAPAG
APEAAESATAAETDSAAESVTAATGSAEVSAPETGEAAAEEEAAPKGRTRRRATRRASAP
AGAPKAAEATEATEAAEAPVTTEAEVTAVAPEVAQEETPEAEDAAPRRARRRATRRVTAP
AAAPTGDAAEERVEAPVTASDKTEAQAATKAEAKAEAKATSETRAAAQAEEAPAAEAAAE
TAEDAGPRRSRRRATRKAAVGFSAPAPKVTGDDSGRRPARPAVAVFQAPVFTEPMFQTPE
RAAAAAAAEAAVERPAEPVEEETAEAAAESGAGAAAGSGAGSTARSGAGSTAGSRRRRRR
GGAEDEPAAVTATEDVVEETEEAEEAEDSVDGDEAEETGSRRRRRRGGRRRRRGESADAD
DESGESDDLAAEQAEQDVEDTAEQVEEDDEEADEREESGGAGSSSSRRRRRRRRRAGDSG
TDAEPGESDPERTVVKVREPRSSKKDEHPSDEVQSIKGSTRLEAKKQRRREGREQGRRRV
PIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKV
QNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPI
GHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTA
AEGASEDELRRDVERLQAQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFTKVIV
SGDEAWETIHGYVAHVAPDLSDRLSKWTSEVDVFATYRIDEQLMKALDRKVWLPSGGSLV
IDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMV
LESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRG
VIVHMEQPTSVGGGGKRKKRGRGGAEQELPHEHEHELAQEPEPDEAVAETEAEVAAEVAA
PVALPAPGYEPDEELYSSAAEAEAAASRGRSRRRATRRASAPAGAPRAEERAPRSRAEER
APKSRAAAEAEPMAVEDPVVEPPVAAEPVVAEPVVAEPVAVAEEEAAPKGRTRRRATRKV
SAPAGSPKAAGEAETVTVVASAPEAEEPKAEQPAEPVAEPAAGPEAPVESAAPARPRRRA
VRKATAPTSSEETAVVVVPSSETASADTAAGAAPSGEAPSAEAPSAEAASSEAEEAPAKK
TAARKTAKKATAKKAATKKTAATKTAAKKTTAKKTTAKKTAAKSTSKKTAAASQPAPSTV
TASTDEA
NT seq 4164 nt   +upstreamnt  +downstreamnt
atgctcgagcccatcgaacccactgagggttccgacaacaacactcccagcgacaccctg
ccgccgcgtcgtcggcgccgtgccgcatcccgcccggcgggcccgccggcggcagtcgcc
gagacggcgaccggggcgaccgcgccggccgaggccgcggcggagaccaccgcgccgatc
acacggcccgcggacatcgcggagaccgcagaggacgcggaggccgcggaggctgccggg
acggaagagaccgaagaggccgccgtcgccgagccggccgaggtggcggctgccaccgag
gacgccgctccgcgccgtacccgccgtcgcgccacgcgccgggtgtccgcacccgcgggc
gcgccggaggccgcggagagcgccacggccgccgagaccgactccgcggctgagtccgtg
accgccgcgaccggttccgccgaggtctccgcgccggagaccggtgaggccgcggccgag
gaagaggccgctcccaagggacgtacgcgccgtcgcgcgacccgccgggcatccgcgccc
gccggtgcgcccaaggccgccgaggcgactgaggccaccgaggctgccgaggcgccggtg
accaccgaggccgaggtgaccgccgtcgctcctgaggttgctcaggaggagacccccgag
gcagaggacgcggccccgcgccgtgcccgccgtcgtgccacccgccgggtgaccgcgccc
gccgccgcgcccacgggcgacgccgccgaagagcgcgtggaggcgcccgtgaccgccagc
gacaagaccgaggcccaggccgcgacgaaggccgaagcgaaggccgaggcgaaggccacg
agcgagaccagggccgcggcccaggccgaggaggccccggccgctgaggccgcggccgag
acggcggaggacgccggtccgcgccgttcccgccgtcgtgccacccgcaaggccgccgtc
ggcttctccgcgcccgcgcccaaggtcaccggggacgactccggtcgccggccggcgcgg
cccgccgtcgccgtgttccaggcgccggtgttcaccgagccgatgttccagacgccggag
cgggcggccgctgccgctgccgccgaggccgcggtggagcggccggcggagcccgtcgag
gaggagaccgcggaagcggccgccgagtcgggtgcgggtgccgccgccggatcgggcgcg
ggttcgactgccaggtcgggcgcgggttcgaccgcgggttcgcgccgtcgccgtcgccgt
ggcggcgccgaggacgagccggccgccgtgaccgccaccgaggatgtcgtcgaggagacg
gaggaggccgaggaggccgaggactccgtcgacggtgacgaggccgaggagaccggttcg
cgccgtcgccgtcgccgtggcggccgtcgtcgccgtcgtggcgagtccgccgacgcggac
gacgagtccggcgagtccgacgacctggccgccgagcaggcggagcaggacgtcgaggac
accgccgagcaggtcgaagaggacgacgaggaggcggacgagcgcgaggagtcgggcggt
gccggctccagcagcagccgtcgccgtcggcgccgccgtcgtcgcgccggtgactccggc
accgacgccgagcccggcgagagcgaccccgagcgcaccgtcgtgaaggtccgcgagccg
cgcagcagcaagaaggacgagcacccgtccgacgaggtgcagtccatcaagggctccact
cgcctcgaggccaagaagcagcgtcgtcgggaagggcgcgagcagggccgccgccgtgtt
ccgatcatcaccgaggccgagttcctggcccgccgtgaggccgtcgagcgtgtgatggtc
gtccgccagagcggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtcgag
cactacgtcaacaaggagcagtcgacctcgtacgtcggcaacgtctacctgggcaaggtc
cagaacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgcc
gtgctctacgccggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgc
atcgagagcgcgctgaagtccggccagtcggtcctcgtacaggtcaccaaggacccgatc
ggccacaagggcgcccgcctcaccagccaggtctccctgcccggccgttacctggtctac
gtgcccgagggctcgatgaccggcatcagccgcaagctgccggacaccgagcgcgcccgc
ctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgcc
gccgagggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctccaggcgcagtgg
gaggacatccagaagaaggcgaagagcggcaacgccccgaccctgctgtacggcgagccg
gacatgaccgtccgggtcgtccgcgacatcttcaacgaggacttcaccaaggtcatcgtc
agcggcgacgaggcgtgggagaccatccacgggtacgtggcccacgtcgcgcccgacctg
tccgaccgcctctcgaagtggacctccgaggtcgacgtcttcgcgacgtaccggatcgac
gagcagctgatgaaggcgctcgaccgcaaggtctggctgcccagcggcggttcgctggtg
atcgacaagaccgaggccatggtcgtggtcgacgtcaacaccggcaagttcaccggtcag
ggcggcaacctcgaagagaccgtgaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctgcggctgcgcgacctgggcggcatcgtcgtcatcgacttcatcgacatggtg
ctggagtccaaccgggacctggtgctgcggcgcctgctggagtgtctgggccgggaccgt
acgaagcaccaggtcgccgaggtgacctcgctggggctcgtccagatgacgcgcaagcgc
gtcggccagggcctgctggagtccttctccgagacctgtgtccactgcaacggacgcggt
gtcatcgtgcacatggagcagccgacgtccgtcggtggcggcggcaagcgcaagaagcgc
gggcgtggcggtgccgagcaggagctcccgcacgagcacgagcacgagcttgcgcaggag
ccggagccggacgaggctgtcgcggagacggaggccgaggtggccgccgaggtcgctgcc
cccgtcgcgctgcccgcgcccggctacgagcccgacgaggagctgtacagcagcgccgcg
gaggccgaggccgccgcttcccggggccgttcgcggcgccgggcgacccggcgggcgtcg
gctccggcgggtgccccgcgggccgaggagcgtgcgccgaggtcgcgggccgaggagcgc
gcgcctaagtcgcgggctgccgcggaggcggagccgatggcggtcgaggacccggtcgtc
gagccgcccgtggccgccgaacccgtggtcgccgagcccgtggtcgccgagcccgtggcc
gtcgccgaggaggaggccgctcccaaggggcgtacgcgtcgtcgtgcgacccggaaggtg
tcggcgcccgccggttcgcccaaggccgccggtgaggcggagacggtgacggtggtggcg
tccgcgccggaggcggaggagccgaaggccgagcagcccgctgagccggtggccgagccg
gccgccgggcccgaggcgcccgtggagagcgcggctccggcccgtccgcgccggcgcgcg
gtccgcaaggccacggcgccgacctcgtccgaggagacggccgtggtggtcgtaccgtcg
agcgagacggcttcggccgacaccgctgccggtgcggctccgtctggtgaggccccttcg
gctgaggccccgtcggctgaggctgcttcgagtgaggccgaggaggccccggccaagaag
acggccgctcgcaagacggccaagaaggcgaccgcgaagaaggcggcgacgaagaagacc
gcggccacgaagacggccgccaagaagacgacggccaagaagacgacagccaagaagacg
gctgccaagtcgacgtcgaagaagacggcggcggcgtcccagccggccccgtcgacggtc
accgcctccaccgacgaggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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