KEGG T00126: SAV

Streptomyces avermitilis: SAV_7136

Entry

SAV_7136 CDS T00126

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sma Streptomyces avermitilis

Pathway

sma03410	Base excision repair
sma03420	Nucleotide excision repair
sma03430	Mismatch repair
sma03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sma03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sma03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sma03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sma03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

complement(8495569..8497107)

AA seq 512 aa
MLLSRLAHVSREVAATSARSRKIALLAELFRDADADDVPIVIPYLAGRLPQGRLGIGWKL
LGRPVTPASEPSLTVRDVDARLTAVGAVTGTGSQAGRGRLMGELMAAATDVEQAFLRGLL
TGEVRQGALDAVAVEGLAEATGAPPADVRRAVMLAGSLQTVARALLAEGPGALDGFRLTV
GRPVLPMLAHTAGSVAEAVGKLGACAVEEKLDGIRVQLHRDGDHVRIYTRTLDDITDRLP
ELTAAALELKGDRFILDGEVIALDGNGRPRSFQEIAGRVGSRVDVAAAAASVPVSPVFFD
ALSVDGRDLLDLPFTERHAELARLVPEPLRVRRALVSGPDDGAAAETFLADTLARGHEGV
VVKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARAADGSFA
MLGKTFKGMTDAMLTWQTERLTELAVEENGSVVTVRPELVVEIAYDGLQKSTRYPAGVTL
RFARVVRYREDKTPAEADTVETLLAAHPEVTR

NT seq 1539 nt +upstreamnt +downstreamnt
atgctgctgagccgcctcgcccatgtgtcccgggaggtcgccgccacctcggcgcggtcc
cggaagatcgcgctgctcgccgagctgttccgggacgccgacgcggacgacgtgccgatc
gtgatcccgtatctggccggacgccttccgcaggggcggctcggcatcggctggaagctc
ctcggccggccggtcacgcccgcgtcggagccgtcgctcaccgtgcgggacgtggacgcc
cggctgacagcggtcggcgccgtcacgggcaccggctcgcaggccgggcgcgggcgcctg
atgggcgagctgatggcggcggccaccgacgtcgagcaggccttcctgcgcgggctgctc
accggcgaggtgcggcagggcgcgctggacgcggtcgcggtcgaggggctggccgaggcg
accggcgcgccccccgccgacgtacgacgggcggtgatgctcgccggatcgctccagacg
gtggcgcgggcgctgctcgcggagggcccgggggccctggacggcttccggctcaccgtc
ggccgcccggtgctgccgatgctggcgcacacggcgggatccgtggccgaggccgtcggc
aagctgggcgcgtgtgccgtcgaggagaagctcgacggcatccgcgtccagctccaccgc
gacggcgaccacgtacggatctacacccgcaccctcgacgacatcaccgaccggttgccc
gaactcaccgccgccgccctggagttgaagggcgaccggttcattctggacggtgaggtc
atcgcgctggacgggaacgggcggccgcgctccttccaggagatcgccgggcgcgtgggc
tcgcgcgtggacgtggccgcggccgccgcgtcggtgcccgtctcccccgtgttcttcgac
gcgctgtccgtcgacggacgggatctgctcgacctgccgttcaccgagcggcacgcggag
ctggcccggctggtgcccgagccgctgcgcgtgcggcgcgcgctcgtgtccggtcccgac
gatggcgccgccgccgagacgttcctcgccgacacgctcgcgcgcggccacgagggcgtc
gtggtcaaagccctcgacgccccctacagcgcgggccggcgcggcgcctcctggctgaag
gtcaagcccgtgcacaccctcgacctggtggtgctcgcggccgagtggggccacgggcgg
cgcaccggcaagctgtccaacctgcacctcggggcgcgcgccgcggacgggtccttcgcg
atgctcggcaagacgttcaagggcatgaccgacgcgatgctgacctggcagaccgagcgg
ctgacggagctggccgtcgaggagaacggctccgtggtgaccgtacggccggaactcgtc
gtcgagatcgcgtacgacggtctccagaagtccacccgctacccggccggcgtcaccctc
cgcttcgcccgcgtcgtccggtaccgcgaggacaagaccccggccgaggccgacacggtc
gagaccttgctcgccgcgcacccggaggtgacccggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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