KEGG   Serratia marcescens subsp. marcescens Db11: SMDB11_4378
Entry
SMDB11_4378       CDS       T03985                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
smac  Serratia marcescens subsp. marcescens Db11
Pathway
smac03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:smac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SMDB11_4378 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smac03021]
    SMDB11_4378 (rpoC)
   03400 DNA repair and recombination proteins [BR:smac03400]
    SMDB11_4378 (rpoC)
Enzymes [BR:smac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SMDB11_4378 (rpoC)
Transcription machinery [BR:smac03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SMDB11_4378 (rpoC)
DNA repair and recombination proteins [BR:smac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SMDB11_4378 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: CDG14936
Position
4700032..4704255
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLNGSKEAERVYRAG
LASLHARVKVRITEDVKNAEGEWTSQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHDGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKACDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAQGEDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGSEFLEGEQAEVSRVKIANRQLEAEGKIAATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQGEAPV
VPQVSAEEATANLAELLNAGLGGSDDE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcctcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atcttcgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgcggcgtgatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgagctggcttcgccgaccgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgctggatatgccgctgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtggtcgaaggcggtatgaccaacctcgagcgtcgtcagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagccgagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggtaacaaaccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgcccgctggttccgctggatggcggtcgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgccatcaccggttccaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaaacgcgttgactactccggccgttccgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaaaaagatggcgctggagctgttcaaaccgttc
atctacggcaagttggagctgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgtgaagaagccgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccactggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtactgggtctgtactacatgacccgcgactgtgttaacgcc
aagggcgaaggcatggtgctgaacggttccaaagaagctgagcgtgtttaccgcgccggc
ctggcgtctctgcatgcgcgcgttaaagtgcgtatcaccgaagacgtcaaaaacgccgaa
ggcgaatggacttctcagaccagcatcatcgacaccaccatcggccgcgccatcctgtgg
atgatcgtaccgaaaggtctgccgtactcgatcgttaaccagcctttgggcaagaaagcg
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcccgttcaggcgcttccgtaggt
atcgacgacatggttatcccggccaagaaagcggagatcatcgaagaagcggaaaccgaa
gttgccgagatccaggagcagttccagtctggtctggttaccgccggcgaacgctacaac
aaagtgatcgatatctgggctgcagcgaacgaacgcgttgcgaaagcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggcgaagtggaacagcaagtttccttcaac
agcatctttatgatggccgactccggtgcgcgtggttccgccgctcagattcgtcagctg
gccggtatgcgtggcctgatggcgaagccggacggctccatcatcgaaacgccaatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgactgtggcacccacgacggcatc
ctgatgactccggttatcgaaggtggcgacgtgaaagagccgctgcgtgaacgcgttctg
ggccgtgtgacggcagaagacgtcctcaagccgggtacggcggacattctggtgccacgc
aataccctgctgaacgagaaggcgtgtgacctgttggaagagaattctgtcgacagcgtt
aaagtccgttccgtagtgagctgtgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaagggtagcctcaagctg
agcaacgtgaagttcgttatgaacgccgcgggcaagctggtgatcacctcgcgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctacaaggtgccttacggt
gccgtgatgggcaaaggcgacggtgaagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccggtcatcagtgaagtcagcggcttcattcgcttcgcggatatg
gttgacggccagaccattactcgccagaccgacgaactgaccggtttgtcttctctggtc
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgctcagggcgaagacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccgggcaaagcgatcgttcagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatctctccgctg
gacggcagcgacgcttacgaagagatgatcccgaaatggcgtcagctcaacgtgttcgaa
ggcgaagtggtggaacgtggtgacgtcgtttccgacggcccagagtctccgcacgacatt
ctgcgtctgcgtggcgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttagcgctggtggctccgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgaaggtaaaatcgcggca
accttctcgcgcgatctgctgggtatcaccaaggcttccttggcgaccgagtccttcatc
tccgctgcatcgttccaggaaacgacgcgcgttctgaccgaagctgccgtagccggcaag
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgtcgccgtgctcagggtgaagcgccggtt
gttccgcaagtcagcgcggaagaagcgacggctaacctggccgagctgctcaacgcaggc
ctgggcggcagcgacgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system