KEGG T00555: Smed

Sinorhizobium medicae: Smed_1305

Entry

Smed_1305 CDS T00555

Definition

DNA polymerase LigD ligase region

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

smd Sinorhizobium medicae

Pathway

smd03410	Base excision repair
smd03420	Nucleotide excision repair
smd03430	Mismatch repair
smd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:smd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:smd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:smd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:smd03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1397752..1398783)

AA seq 343 aa
MFYKPKESIRLFAGLCVNGLMAKASSKKPRDVAPMDPMPARVDPCLATLVDKPPIGPDWA
YEVKWDGYRLSVHIEPGRVRILTRGGYDWTERFPTIADDARRLAVKTAIFDGEAVVLDEQ
GRSDFGMLQRALGRLPSAVEAGAIVLYAFDLLYLDGRDLRRLPFGERRRLLEPLVAGREG
AVRLSEEVQADGDEFFRVACEHGLEGIIAKHIEKPYRSGRGEWWQKITCKRRDSFVIVGF
EPSTVPGHLGRLLLAARKDGELVYVGGCGTGWSHELSRELRNLLEGMATKIPAVALRRKG
AVFVEPVLVAEVEYRAWTDDGKLRHASFKGIREREDEAGVYSL

NT seq 1032 nt +upstreamnt +downstreamnt
atgttctataagccgaaagagtcaattcggcttttcgcgggcctgtgcgttaatggcctg
atggccaaagcatcctcgaagaagcctcgcgatgtcgctccaatggatcccatgccggcg
cgcgtcgatccctgccttgccactctcgtggataagccgccaatcggccccgactgggcc
tatgaggtgaagtgggacgggtaccggctgtccgtgcacatcgagcctggccgggtgcga
atactcacgcgcggtggctacgactggaccgagcgcttcccaacaatcgcagacgacgcg
cggcgcctcgccgtgaaaacggcgatcttcgacggggaggcggttgttctcgacgagcag
gggcggtccgatttcggcatgctgcagcgggcgctcgggcgacttccttcggcggtcgaa
gccggcgccatcgtcttatatgcctttgacctcctctatcttgacggccgcgatcttcgc
cgtctgccgttcggagagcgccggcgattgcttgagccgctcgttgcaggtcgggaaggg
gccgtccgcctttctgaggaggttcaggctgatggcgacgagttctttcgcgttgcgtgc
gaacacggccttgagggcatcatcgccaagcacattgagaagccataccgctcaggtcga
ggcgagtggtggcagaagatcacctgcaagcgccgggatagctttgtgatcgtcggcttc
gagccgtcgacagtgccaggtcatctcgggcggcttctcctcgccgcgcgcaaggacggc
gagctcgtctatgtcggcggctgcggaactggctggtcacatgagctttcgcgtgagctg
cgtaatctgctcgaagggatggcgacaaaaatcccggcggttgcgctgcggaggaagggc
gccgtctttgtcgagccggtgctcgtcgcggaggttgagtatcgcgcctggacagacgac
ggaaagctaaggcatgcctcgttcaaggggatcagggagcgggaggatgaggcgggggtg
tatagtctgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SMD (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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