KEGG   Sinorhizobium medicae: Smed_4484
Entry
Smed_4484         CDS       T00555                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
smd  Sinorhizobium medicae
Pathway
smd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Smed_4484
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smd03019]
    Smed_4484
Messenger RNA biogenesis [BR:smd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Smed_4484
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD AAA_22
Other DBs
NCBI-ProteinID: ABR63284
UniProt: A6UI04
Position
pSMED01:complement(968351..969847)
AA seq 498 aa
MSTFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPM
IEKLQADGKRPDPRNIRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQT
LTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIEIAVASGEVPADQARPSKGRGGRGNAQSRGNGAGQRQGGPRRDRPQRQSAAGG
FAGDELLRDDRSQQHERRDHRAPGQDGRPEGNRNHEAKKHHGRPGPKRDGRRGNEGQPSN
RNEGARGMRRAENRAPRG
NT seq 1497 nt   +upstreamnt  +downstreamnt
ttgtccacatttaaagagctcggcctctcgcaggagatcctggcgacactgaccgccaac
ggtttcgagaagccgacgcccatccagacccaggccattccgcttgtcctccaaggccgc
gatctcatcggcctcgcccagacgggcacgggcaaaacggccgcctttggcctgccgatg
atcgaaaagcttcaggccgacggcaaacgccccgatccgcgcaacatccgtgccctcatc
cttgcgccgacccgagagctcgtcaaccagatcgccaccaatcttaaactcttcgtgaag
aagacaccgattaaagtcggagtcgtggtaggcggcgtgtcgatcaacaagcagaccgaa
cagctggcgcgcggcgtcgatattctcgtcgcaacgcccggccgtctgctggatctcatc
tcccgcaaggctgtgaccctcacccagggacgctacctcgtcctggacgaggccgaccag
atgctcgacctcggctttattcacgacctgcgcaagatcgcgaagctcgttccgaagaat
cgtcagacgctgctcttctccgcgaccatgccgaagctgatcgccgagcttgccggcgaa
tatctcaccgatccggtcaaggtcgaggtcacgcggcccggcaaggcggccgacaaggtc
gagcaatatgtccacttcgttccgggcaaggacctgaagacgacaatcctcaaacagacg
ctgaccgcaaatccggacggattgtcgctggtcttcagccgcaccaagcatggcgccgaa
aagctgatgaagcatctggaccaggtcggtttcaaggccgcctcgatccacggcaacaag
agccagggccagcgagagcgcgctctgaaagccttccgcgatggtgaaatccgtgtactc
gtggcgaccgatgtcgccgcacgcggcattgacattcccggcgtgacgcatgtctacaac
tacgacctgccggaggtggccgacgcttatgtccaccgtatcggccgcacggcccgaaac
ggccgcgacggtattgcgatcgccttttgcgccccggacgaaatccggctgctgcgcgat
attgaaaagctgatgggcatcgagattgccgtcgccagcggagaagttccggccgaccag
gcccgcccgtccaagggacgcggcggtcgcggcaacgcccagtcccgcggcaatggcgca
ggacagcgccagggcggacctcgccgggatcggccacaacgccagtcggcagccggcggc
ttcgccggcgacgaactgttgcgcgacgaccgttcgcaacagcacgagcgccgcgatcat
cgtgctccgggccaggacggtcgtccggaaggcaaccgcaaccacgaagccaagaagcac
catggccgtccgggcccgaagcgtgacggccggcgcggcaatgaaggccagcccagcaac
cgcaatgaaggcgcccggggcatgcgccgcgcggaaaatcgcgcgccgcgagggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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