KEGG T02497: SM2011

Sinorhizobium meliloti 2011: SM2011_c01336

Entry

SM2011_c01336     CDS       T02497

Symbol

rne

Name

(GenBank) putative ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

smel Sinorhizobium meliloti 2011

Pathway

smel03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:smel00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SM2011_c01336 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smel03019]
    SM2011_c01336 (rne)
   03009 Ribosome biogenesis [BR:smel03009]
    SM2011_c01336 (rne)
Enzymes [BR:smel01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SM2011_c01336 (rne)
Messenger RNA biogenesis [BR:smel03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SM2011_c01336 (rne)
Ribosome biogenesis [BR:smel03009]
Prokaryotic type
  rRNA processing factors
   SM2011_c01336 (rne)

SSDB

Motif

Pfam:

RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG

Other DBs

NCBI-ProteinID:

AGG73907

Position

complement(1441636..1444410)

AA seq 924 aa
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDEPNDTVAEQKFAPAGDTV
AEVVAQAEAAEAAGEAAEAAAEKPKAKAKPKRTRRAKPKAGEEAVAPESGPSEDGEGDKN
EMAAVVDTDSISEDIDARRQRDDDDDDDNHDGEKEIIESVGAEDAMEEVADRHIRKPRKQ
YRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQ
DRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCL
VYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFS
RSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAA
EEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEM
SRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDI
ALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQILQFEPEP
EDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKRRRRRRGKGAGQGADEAFA
DAADAAEDETGDEAAVDDAEDEVDATDALNGDSEQKRKRRRRGKRGGRRSRQDELAEAEG
ETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRRSRKKAVK
AEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAIATEPVVTS
SKGEGEEEPTKPKKGGWWQRRGFF

NT seq 2775 nt +upstreamnt +downstreamnt
atggcagagaaaatgcttatcgatgcgtctcactcagaggagacgcgcgtcgttgtcgta
cgcggaaaccgcatagaagaattcgatttcgaatcggaacataagaagcagatccgcggc
aatatctacctggcgaaggtaaccagagtggagccgtcgctccaggcggccttcgtcgat
tacggcggcaatcgccacgggtttctggccttcgccgaaatccatcccgactactaccag
attcccctcgccgatcgtcaggccctgttgaaggcggaagccgaagaggctcgccgcgac
gatgacgagccgaacgacaccgtggcggaacagaaattcgcgccggctggcgatacggtt
gccgaagtcgtggcacaggccgaagccgccgaggcagccggagaagccgctgaggccgct
gcggagaagccgaaggccaaggccaagccgaagcgtacccgccgcgcgaagccgaaggcc
ggcgaagaggccgtggcgcctgaaagcggcccgtcggaagacggcgaaggcgacaagaac
gaaatggccgcggtggtcgataccgactcgatctccgaggatatcgacgcgcgccgtcag
cgtgacgacgacgatgacgacgacaatcacgacggcgaaaaggaaatcatcgaatccgtc
ggcgccgaagatgccatggaagaggtggcggatcgtcatatccgcaagccgcgcaagcaa
taccgcatccaggaagtgatcaagcgccggcagatcctgctggtgcaggtcgcaaaggaa
gagcgcggcaacaagggtgcggcactcacgacctatctttcgctcgccggccgctactcc
gttctcatgccgaacacggcgcgcggcggcggtatttcgcgcaagatcaccaacctgcag
gaccgcaagcgtctgaaggagatcgcccgcggtctcgacgtgccgcaggggatgggtgtg
atcctgcgcaccgccggagccaatcgcacgaaagtcgagatcaagcgcgacttcgaatat
ctcatgcgcctgtgggagaacgtccgcacgctgacgctgaactcgactgccccctgcctc
gtctacgaggagggcagccttatcaagcgatcgatccgcgacctctacaacaaggacatc
agcgagatcgtcgtttcgggcgaggaaggctacaaggaagccaagggcttcatgaagatg
ctgatgccgagccacgcaaaggtcgtgcagccctatcgcgacgtgcatccgatcttctcc
cgctccggcatcgaagcacagctcgatcgcatgctgcagccgcaggtgacgctgaagtcg
ggcggctacatcatcatcaaccagaccgaagctctggtttccatcgatgtgaactccggt
cgttcgacgcgcgagcactcgatcgaggatacggctctccagacgaatctcgaggcagcc
gaggaagtagcgcggcaattgcgccttcgcgaccttgccggcctgatcgtcatcgacttc
atcgacatggaagagaagcggaacaaccgctccgtcgagaagaagctaaaggattgcctg
aagaacgatcgtgcccgtatccaggtcggccgcatctcgcatttcggcctgctcgaaatg
tctcgccagcgcatccgcgcctcggtgctggaaagcacgatgcagacctgcccgcactgc
aacggcacgggccacattcgctcgcaatcctccgttgccctgcatgtcctgcgcggcatc
gaggaacatctgctcaagaacaccacgcacgacatcagcgtgcggacgacacccgatatc
gcgctctacctgctcaatcagaagcgcagttcgatcacggactacgagcagcgcttcggt
gtctccatcttcatcgaagcggacgcccatgtcggtgcgcagcacttcgcgatcgatcgc
ggtgaaccggtcgaaaatccggtgaggatcgaccagatcctgcagttcgagccggagccg
gaagacgaagaagaggtcctcatcgaggaggagtccgacgaagaggaagtggaagagatt
gctgccgagcgtcaggacccgaaaaaggggcagaccgacgaacaaggcggccgcaagcgc
aagcgtcgtcgccgccggcgcggcaagggtgcgggtcagggggcggacgaggccttcgct
gacgccgccgacgcggctgaggacgagaccggcgacgaagccgccgtggacgatgccgag
gatgaagtcgacgctacggatgccttgaatggcgatagcgagcagaagcgcaagcgtcgc
cgccgcggcaagcgtggcggccgccgcagccgtcaggacgaactggccgaagccgagggc
gagaccggcatggctgcagaagccggcgaaggagccggcgacgacgcagaggcggaagtc
gccccagccgcggcagccgaggagacgtcaccggatatcgcggcagccgctgccgtcgag
gcagcagcggaggagccgaaaccggcaaaaccccggcgcagccgcaagaaagcagtcaag
gccgaggagccggccgagagtgtcgatgaagtagccgagaagaccgtcgaggcccaaccc
gaagcaaccgaagccgcccccgaggccgtggaggaagctgttgccgatctggaaggcgca
aagcccgcgcgcgcaaaccgggatctgtcggcgatcgctaccgagccggtcgtgacgtcc
agcaagggcgagggcgaagaggagccgacaaaacccaaaaagggcggctggtggcagcgc
cgcggtttcttctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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