KEGG   Sinorhizobium meliloti Rm41: BN406_01034
Entry
BN406_01034       CDS       T02332                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
smi  Sinorhizobium meliloti Rm41
Brite
KEGG Orthology (KO) [BR:smi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smi03032]
    BN406_01034 (topA)
   03400 DNA repair and recombination proteins [BR:smi03400]
    BN406_01034 (topA)
Enzymes [BR:smi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BN406_01034 (topA)
DNA replication proteins [BR:smi03032]
 Prokaryotic type
  DNA Topoisomerases
   BN406_01034 (topA)
DNA repair and recombination proteins [BR:smi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BN406_01034 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom
Other DBs
NCBI-ProteinID: CCM67079
Position
complement(1059161..1061845)
AA seq 894 aa
MNVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAK
RMKDIADAVKSSDGLILATDPDREGEAISWHVLDLLRKKKVIGDKPVKRVVFNAITKKAV
LDAMAEPRDIDASLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVTEEYWNISALLKTPRGDEFEARLVSADGKRLPPKAIGNGEEANRLKSLLDGA
SYVVESVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIEAARQAIGSQFGERYLPEKPRFYSTKAKNAQEAHEAIRPTDFDR
TPDQVRRFLDGDMLRLYDLVWKRGIASQMASAEIERTTAEIVADNAGKKAGLRATGSVIR
FDGFIAAYTDMKEDGEQADDGDEDGRLPEINARENLAKQKINASQHFTEPPPRYSEATLI
KKMEELGIGRPSTYAATVTTLIDRDYVEIDKRKLVPQAKGRLVTAFLESFFTRYVEYDFT
ASLEEKLDQISAGELNWKDVLRDFWKDFFSQIEDTKELRVTNVLDALNEELAPLVFPKRE
DGGDPRICQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSDSNGDAEAAAANEPQSL
GKDPHTGEEITLRNGRFGPYVQRGDGKEAKRASLPKGWTPAAIDHEKALALLSLPRDIGP
HPESGKMISTGIGRYGPFVLHNGTYANLESVEDVFSIGLNRAISVLADKQSKGAGGGRAS
AAALKELGEHPDGGAITVRDGRFGPYVNWGKVNATLPRGKDPQSVTVEEALALIAEREAK
GGVTKGKAAKGKPTGGKSAGTKSAKAASAGTAKAEKPKSAAKTKTKAAAKAKKD
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgaatgttgtagtggtggaatcgccttccaaggccaagacgatcaacaagtacctgggc
ccaggctacaaggtgcttgcctcgttcggccacgtgcgtgacctgcctgccaaggacgga
tcggttcgccccgacgaagacttcgagatgtcctgggaggtcgacggcgcttccgccaag
cggatgaaggacatcgccgatgcggtgaaatcgtccgacggtctcattctcgcgaccgac
cccgaccgcgagggcgaggcgatctcctggcatgtgctcgaccttctcaggaagaaaaag
gtcatcggcgacaagccggtcaagcgcgtcgtcttcaatgcgatcaccaagaaggccgtg
ctcgatgcgatggccgaaccccgcgacatcgatgcctcgctggtcgacgcatatctcgca
cgccgcgctctcgactacctcgtcggcttcaatctttcgcccgtgctctggcgcaagctg
ccgggcgcacgctcggcgggccgcgtgcaatcggtggcgctgcgcctcgtctgcgaccgc
gaggcggagatcgagcgcttcgtcaccgaagaatactggaacatctcggcgcttctgaag
acaccgcgcggcgacgaattcgaagcgcgcctcgtttcggccgacggcaagcggctgccg
ccgaaggcgatcggcaatggcgaggaagccaaccggttgaagtccctgctcgacggcgcg
agctacgtcgtcgagagcgtcgaggccaagccggtcaaacgcaatccctccccgcccttc
accacttcgacgctgcagcaggccgcctcctcgaagctcggcttctcggcatcgcgcacc
atgcaggtggcgcagaagctctatgaaggcgtcgatatcggcggagaaaccgtaggtctc
atcacctatatgcgaacggacggcgtgcagatggcgccggaagcgatcgaggccgcgcgc
caggccatcggcagccagttcggagagcgttatcttccggaaaagccgcgcttctattcc
accaaggcaaagaatgcccaggaagcgcacgaggccattcgcccgaccgatttcgaccgc
acgcccgaccaggtccggcgcttcctcgacggcgacatgctgagactgtacgatcttgtc
tggaagcgcggtatcgcgagccagatggcgtctgcggagatcgagcgcaccaccgccgag
atcgtcgccgacaatgccggcaagaaggcgggtctcagggcaaccggctcggtcatccgc
ttcgacggcttcatcgctgcctataccgacatgaaggaagacggcgagcaggcggatgac
ggcgacgaggacggccgccttccggaaatcaacgcacgcgaaaatcttgccaagcagaag
atcaacgccagccagcacttcaccgagccgccgccgcgctattcggaagcgacgctcatc
aagaagatggaagagctcggtatcggccgcccgtcaacctatgcggcgaccgtcacgacc
ctcatcgaccgtgactatgtggagatcgacaagcgcaagctggtgccgcaggcgaaaggc
cgtctggtcactgcgttcctcgaaagcttcttcacccgctatgtagaatatgatttcacc
gcgtcgctcgaggagaaactcgaccagatttcggcaggcgaactcaattggaaggacgtg
ctgcgcgacttctggaaggacttcttctcccagatcgaggacaccaaggaactgcgcgtc
accaacgtgctcgatgcgctcaacgaggaactggctccgctcgtcttcccgaagcgggaa
gatggcggcgacccgcgcatttgtcaggtctgcggcaccggcaagctgtccctgaagctc
ggcaaatacggcgctttcgtcggatgctccaattacccggaatgcaactacacgcgccaa
ctctcctccgacagcaacggtgacgccgaagcagctgcagcgaacgagccgcaaagcctc
ggcaaggatccgcataccggcgaggaaatcacgctgcgcaacggccgcttcggcccctat
gtccagcgcggcgacggcaaggaggcgaaacgcgccagcctgccgaagggttggacgccg
gcggcgatcgatcacgagaaggccctcgccctgctctccctgccgcgcgatatcgggccg
catccggaaagcggcaagatgatctccaccggcatcggccgctatggccccttcgtgctt
cacaacggcacctatgccaatctggaatccgtcgaggacgtcttctctatcggtctgaac
cgcgcgatttccgtccttgccgacaagcagtccaaaggggctggcggcggacgcgctagc
gcggcggccctcaaggagcttggggaacatccggacggcggcgcgattactgttcgcgac
ggacgcttcgggccctacgtcaactggggcaaggtgaatgccacgctgccgaggggtaag
gacccgcaatcggtcacggtcgaggaagcgcttgcgctcatcgccgagcgcgaagcgaaa
ggcggcgtgaccaagggcaaggcggcaaagggaaagccgaccgggggaaaatcggccgga
acgaagtctgccaaggctgcatcggccggaactgcgaaagcggagaagccgaaatcagca
gcgaagacgaaaacgaaagcggccgcgaaggccaagaaggactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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