KEGG   Breviolum minutum: v1.2.035319.t2
Entry
v1.2.035319.t2    CDS       T04349                                 
Symbol
symbB.v1.2.035319.t2
Name
(OIST) -
  KO
K13126  polyadenylate-binding protein
Organism
smin  Breviolum minutum
Pathway
smin03015  mRNA surveillance pathway
smin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smin03019]
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
   03041 Spliceosome [BR:smin03041]
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
Messenger RNA biogenesis [BR:smin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     v1.2.035319.t2 (symbB.v1.2.035319.t2)
   mRNA cycle factors
    Stress granule specific factors
     v1.2.035319.t2 (symbB.v1.2.035319.t2)
Spliceosome [BR:smin03041]
 Complex C
  Other components
   Complex C specific factors
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
SSDB
Motif
Pfam: RRM_1 RRM_7
AA seq 344 aa
EHTIYVANLDWSVDEAQLYRIFQDIEGSKGYAYVDFDSPEHVAEAVEKFSGHLVNNRVMK
VAKSLPTKQLYEEKVLFVRNIGESAKEDDVKEAFKMHEVVSVRMPRGQEGHKGYAYVEFT
NDEAVKVCLTLEGLEIGGQHVTLSRSIPMKDHRHTTAATRKDLPQRVNQRLIVQGKLDRE
DPVRQSAKCPTTVYVKNLAFNVDETALEQHFQSCGEVAQVLIVKTNDGRSRGFGFVEFQN
FEGAQGALLLSDSILGGREIVVSKSSRAITQKKAKDDEEEGGKGPSKGKFKSKGEKGDKG
KGKGKEKGKEKDKSKAEGGRRRFQMDDASDDEADAKKPRFTLTS
NT seq 1569 nt   +upstreamnt  +downstreamnt
gtgagcacaccatctacgtcgccaacttggattggtctgtggatgaagctcaattgtatc
ggatttttcaagatatcgaaggatccaaaggctatgcctacgtggattttgactcccccg
agcacgtcgctgaagccgtggagaagttttcaggccatctcgtcaacaaccgagtcatga
aggtggccaagtccctcccaacgaagcagctttatgaggagaaggttcttttcgtgcgga
acatcggagaaagcgccaaggaggatgatgtgaaggaggccttcaaaatgcatgaagtgg
taagtgtgcgcatgcctcgtggacaggaggggcataaaggttatgcctatgtggaattca
ccaacgacgaagcggtgaaggtgtgtttgactttggaaggactcgaaattgggggccaac
atgtcaccctgtcgaggtcgatccccatgaaagaccatcgtcacaccacagcagcgacac
gaaaagatctgcctcagagagtgaatcagcgtttgattgttcaaggaaagttggatcgtg
aagaccctgttcgccaatctgccaagtgccctacaacggtctatgtgaaaaacctagctt
tcaacgtggatgagacggctttggagcagcatttccagtcttgtggtgaagtggcacagg
tgttgattgtgaaaaccaacgacggccgttcgcgtggctttggctttgtggagtttcaga
actttgaaggtgctcaaggtgccttgctcttgtcagatagcattctgggtggcagagaaa
ttgtcgtatccaagagttcgagagccatcacacagaagaaagcgaaggatgatgaagaag
aaggtggcaagggtccaagcaaaggcaagttcaaaagcaaaggcgaaaagggagacaaag
gcaaaggcaaaggaaaagagaaaggaaaagaaaaagacaagtcaaaggccgagggtggac
gacgtcgattccaaatggatgatgcaagtgatgatgaagcggatgccaagaagccaaggt
tcaccctgacctcgtaagaaaaacgtgttgccttgctgccatggctgccacaggggggtc
cgaggcaccacgtgagggccgttttctgctggacatgtcacagatctttggaagtcagat
ctggttggatgtgactgctctggctgagtcgattcgtggtgacaagtggcgcctgctgat
agcctgcatcatcattgacatcattggaatggcaagttatttgatcttttttattggaga
gttcaccgatttgatgtgggcgcccatcgcggggttcttgctacagtacctctttggaag
cttacttgtcagctcccttggagctctcgaggaattcttgcccttcaccgacattctgcc
tacagccaccctggcctgggcgatttgtcacttggagtgcttatccttcatacgcctgtt
gctgggcgttcagcgccacagtctcgcagtggaagataagaatgattgagatatggtgac
gttgatgaccctgacggccgaagcaaatagcagtttagcatcagagacccacatgaacag
agggttgga

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