KEGG   Breviolum minutum: v1.2.035319.t2
Entry
v1.2.035319.t2    CDS       T04349                                 
Symbol
symbB.v1.2.035319.t2
Name
(OIST) -
  KO
K13126  polyadenylate-binding protein
Organism
smin  Breviolum minutum
Pathway
smin03015  mRNA surveillance pathway
smin03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smin00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smin03019]
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
   03041 Spliceosome [BR:smin03041]
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
Messenger RNA biogenesis [BR:smin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     v1.2.035319.t2 (symbB.v1.2.035319.t2)
   mRNA cycle factors
    Stress granule specific factors
     v1.2.035319.t2 (symbB.v1.2.035319.t2)
Spliceosome [BR:smin03041]
 Complex C
  Other components
   Complex C specific factors
    v1.2.035319.t2 (symbB.v1.2.035319.t2)
SSDB
Motif
Pfam: RRM_1 RRM_7
AA seq 344 aa
EHTIYVANLDWSVDEAQLYRIFQDIEGSKGYAYVDFDSPEHVAEAVEKFSGHLVNNRVMK
VAKSLPTKQLYEEKVLFVRNIGESAKEDDVKEAFKMHEVVSVRMPRGQEGHKGYAYVEFT
NDEAVKVCLTLEGLEIGGQHVTLSRSIPMKDHRHTTAATRKDLPQRVNQRLIVQGKLDRE
DPVRQSAKCPTTVYVKNLAFNVDETALEQHFQSCGEVAQVLIVKTNDGRSRGFGFVEFQN
FEGAQGALLLSDSILGGREIVVSKSSRAITQKKAKDDEEEGGKGPSKGKFKSKGEKGDKG
KGKGKEKGKEKDKSKAEGGRRRFQMDDASDDEADAKKPRFTLTS
NT seq 1569 nt   +upstreamnt  +downstreamnt
gtgagcacaccatctacgtcgccaacttggattggtctgtggatgaagctcaattgtatc
ggatttttcaagatatcgaaggatccaaaggctatgcctacgtggattttgactcccccg
agcacgtcgctgaagccgtggagaagttttcaggccatctcgtcaacaaccgagtcatga
aggtggccaagtccctcccaacgaagcagctttatgaggagaaggttcttttcgtgcgga
acatcggagaaagcgccaaggaggatgatgtgaaggaggccttcaaaatgcatgaagtgg
taagtgtgcgcatgcctcgtggacaggaggggcataaaggttatgcctatgtggaattca
ccaacgacgaagcggtgaaggtgtgtttgactttggaaggactcgaaattgggggccaac
atgtcaccctgtcgaggtcgatccccatgaaagaccatcgtcacaccacagcagcgacac
gaaaagatctgcctcagagagtgaatcagcgtttgattgttcaaggaaagttggatcgtg
aagaccctgttcgccaatctgccaagtgccctacaacggtctatgtgaaaaacctagctt
tcaacgtggatgagacggctttggagcagcatttccagtcttgtggtgaagtggcacagg
tgttgattgtgaaaaccaacgacggccgttcgcgtggctttggctttgtggagtttcaga
actttgaaggtgctcaaggtgccttgctcttgtcagatagcattctgggtggcagagaaa
ttgtcgtatccaagagttcgagagccatcacacagaagaaagcgaaggatgatgaagaag
aaggtggcaagggtccaagcaaaggcaagttcaaaagcaaaggcgaaaagggagacaaag
gcaaaggcaaaggaaaagagaaaggaaaagaaaaagacaagtcaaaggccgagggtggac
gacgtcgattccaaatggatgatgcaagtgatgatgaagcggatgccaagaagccaaggt
tcaccctgacctcgtaagaaaaacgtgttgccttgctgccatggctgccacaggggggtc
cgaggcaccacgtgagggccgttttctgctggacatgtcacagatctttggaagtcagat
ctggttggatgtgactgctctggctgagtcgattcgtggtgacaagtggcgcctgctgat
agcctgcatcatcattgacatcattggaatggcaagttatttgatcttttttattggaga
gttcaccgatttgatgtgggcgcccatcgcggggttcttgctacagtacctctttggaag
cttacttgtcagctcccttggagctctcgaggaattcttgcccttcaccgacattctgcc
tacagccaccctggcctgggcgatttgtcacttggagtgcttatccttcatacgcctgtt
gctgggcgttcagcgccacagtctcgcagtggaagataagaatgattgagatatggtgac
gttgatgaccctgacggccgaagcaaatagcagtttagcatcagagacccacatgaacag
agggttgga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (343)   
   KEGG ORTHOLOGY (1)   
   RefGene (341)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (351)   

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