KEGG   Spiroplasma mirum ATCC 29335: SMM_1023
Entry
SMM_1023          CDS       T03003                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
smir  Spiroplasma mirum ATCC 29335
Pathway
smir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SMM_1023 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smir03400]
    SMM_1023 (uvrB)
DNA repair and recombination proteins [BR:smir03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SMM_1023 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SMM_1023 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_7 P-loop_SecA AAA_22 Helicase_C_2 AAA_30 TrwB_AAD_bind HerA_C DUF87 AAA AAA_19 AAA_16 AAA_5
Other DBs
NCBI-ProteinID: AHF61399
UniProt: W0GRY0
Position
complement(958179..960143)
AA seq 654 aa
MFKLVSDYKPSGDQPVAINEITAGILANKRHQVLLGATGTGKTFTMANVINQINKPTLVM
AHNKTLAMQLYVELKELFPDNRVEYFVSNFDFYQPEAYVPSKDLYIDKDAKQNMELDMMR
LSALNALSTTKDVIVVASVAAIYGAQDPREYRKSFFELKRNQILSKKELSAYLVGSGYTR
NDIELIPGTFSAKGDIIKIAPGWNMKNFIRLDLFGDEIDDISVVDGLTGDIIQKLTNLTI
FPAQDYITSPERMKIAIENIEKELQERLAELRSQGKILEATRLEQRTEYDLDALRETGIC
SGIENYSRHLDLRQPGEPPYTLIDYFGTDFLTIIDESHMTLPQIRAMYNTDRSRKETLVN
YGFRLPSALDNRPLNFDEFNQKLKNIVYISATPGDYELELLNNQVTQQIIRPTGLLDPTV
EVKPTVGQIDDIIAQIKLRREKNERVFITTLTIRMSEDLTSYLQEQNIKVAYLHSELKTL
ERSQILLELRKGVYDCIVGVNLIREGIDIPEVSLICILDADKQGFLRNERSLIQTIGRAA
RNANGHVILYADRISDAMAKAMKETLRRRSIQNDYNIMNEIKPQTIIKPIRDYTNIKIRD
DKLHKIKNKNSKEYKTAKEALLNDLRKEMYQASEKLDFAKAAELRDIIIEIEAQ
NT seq 1965 nt   +upstreamnt  +downstreamnt
atgtttaaattagtatcagattataaaccatctggtgaccaaccagttgcaattaatgaa
attaccgcgggaatacttgcgaataaacgtcatcaagttttattaggagctacgggaacc
ggaaaaacttttacgatggccaatgttattaatcaaattaataaaccaactttagtaatg
gctcataataaaacgttagcaatgcaattatatgttgaactaaaagagttgtttcccgat
aaccgcgtggaatactttgttagtaactttgatttttaccaaccagaagcttatgttccc
agtaaagatttgtatattgataaagatgctaaacaaaatatggaattagatatgatgcgc
ttaagtgccttaaatgcactttcaacaacaaaagatgttattgttgttgcttcagtagca
gcaatttatggggcccaggatccccgtgagtatcggaaatcattttttgaattaaaacgg
aatcaaattttaagtaaaaaagaattatcagcttatttagttggctctggatatacgcga
aatgacattgaattaattcccggaacttttagtgcaaaaggtgatattattaaaattgcg
ccagggtgaaatatgaaaaattttattcggttagatttatttggtgatgaaattgatgat
atttcggttgttgatgggttaaccggcgatattattcaaaaattaacaaacttaacaatt
tttccagcccaggattatattacgagccccgaacgtatgaaaattgccattgaaaatatt
gaaaaagaactccaagaacggttggcagagttacgcagtcagggaaaaattttggaagca
actagattagaacaacgtacagaatatgatttagatgccttacgcgaaaccgggatttgt
tcaggaattgaaaactattcacgacatttggatttacgtcaaccgggtgaaccaccatat
actttaattgattattttggaactgattttttaacaatcattgatgaatcccacatgacc
cttccgcaaattagagcaatgtataatactgatcgcagtcggaaagaaaccttagttaat
tatggttttcgtctaccaagtgctttggataatcgtccattaaactttgatgagtttaac
caaaagttaaaaaatattgtttatatttccgccaccccgggtgattatgaattagaatta
ctaaataaccaagtaacccaacaaattattcgtccgactggtttattagacccaactgtc
gaagttaaaccaactgttggccaaattgatgatattattgcacaaattaaattacgaaga
gaaaaaaatgaacgggtatttattacaactttaacaattcggatgtcagaggatttaacc
agttatttacaagaacaaaatattaaagtggcttatcttcatagtgaattaaaaacgtta
gaacgcagtcaaattttactagaacttcgcaagggagtttatgattgtattgtcggagtt
aacttaattcgggaagggattgatattcctgaagtttcgttaatttgtattttagatgct
gataaacaaggatttttaagaaatgagcgaagtttaattcaaacgattggacgagctgca
cggaatgctaatgggcatgttattttatatgcggatcgcatttctgatgcgatggcaaaa
gcaatgaaagaaactcttcgtcgccgtagcattcaaaatgactataatattatgaatgaa
attaaaccgcaaactattattaaaccaattcgtgactacactaacattaaaattcgcgat
gataaattacataaaattaaaaataaaaattccaaagaatacaaaacagcaaaagaagcc
ttattgaatgatttacgaaaagaaatgtaccaggctagtgaaaaattggattttgcaaaa
gcagcagagttgcgggatattattattgaaattgaagcccaataa

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