KEGG T00718: Smlt0053

Stenotrophomonas maltophilia K279a: Smlt0053

Entry

Smlt0053 CDS T00718

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sml Stenotrophomonas maltophilia K279a

Pathway

sml03410	Base excision repair
sml03420	Nucleotide excision repair
sml03430	Mismatch repair
sml03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sml03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sml03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sml03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sml03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

190572139

NCBI-GeneID:

6391857

UniProt:

B2FU16

Position

56221..58707

AA seq 828 aa
MSLHQYRRKRRLGGGAGQTTEPDDTPAPGDPKQRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVEVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRGDGEARDAEADDLLTAPMPK
RTPAAKKRSADKTARAAPVARTTTRKADVRWHARALQLHGARDAPYPHAFKPQLTDHRDS
APDGDRWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPEVVQAVQALPVRDARLDG
ELVVLDKEGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGADISRAPLLERKALLKELIG
PAPGTLAFSEHVIDHGPQVFDASGKAGFEGTVSKQVDAPYVNTRARSWVKVKHEDTDEFL
IVGYTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDQSLRALLKALQPLAVKTPVLQ
LPAHVPFRAASVRWVKPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADTET
GGEVEITHPERVVFPRQKLRKGDVADYYQRMARWILPEIAGRPLSLLRCPDGVGKACFFQ
KHHGPGLGDAVHAVPLQQKSGREDYVYVDDARGLLQLVQMNTLELHPWGATVADPEHPDR
LVFDLDPGEGVSWAQVKAAARDVRDRLQEVGLQSFVRLSGGKGVHVVVPLQPKAGWDEAK
AFCEAFAQAMALEQPDRYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARDAAGVAV
PLRWEELARVSAADAFPMAKALARAKRLKGDPWQGIARLKQRLPSLKR

NT seq 2487 nt +upstreamnt +downstreamnt
atgtcgttgcaccagtatcggcgcaaacgccggcttggcggtggcgccgggcagacaacg
gagcccgacgacacgcccgcaccgggcgacccgaagcagcggccgacctttgtcatccag
ctgcaccatgccagctcgcgtcactatgacttccgcctggaaatggacggcgtactgaag
agctgggcggtgcccaaggggccttccctgcgcgtcggtgaaaagcggctggccgtggaa
gtggaagaccatccgctctcctacgccggtttcgagggagacattcctgaaggccactat
ggtgcgggccacgtggaagtcttcgatcacggcacctgggcctgtgaaggcgatccactg
caggcactggcggcgggcaagatcgacttcgtgctgcatggacaacgcctggccggtggc
tggaagctggtgcggaccgcgatgaaaggacgccaggtgcagtggctgttgatcaagcgc
ggtgacggggaagcgcgcgacgcggaggcggatgacctgctgacggcaccgatgccgaaa
cgaacacctgcggcgaagaagcgttccgcggacaagacggcgcgagctgcacccgtcgca
cgcacgaccacacgcaaggccgatgtgcgctggcatgcacgcgcgctgcaactgcacggc
gcacgtgacgcaccctacccgcatgcattcaaaccgcagttgaccgatcatcgcgacagt
gcgccggacggcgaccgctggcttcacgagatcaagtgggatggctatcgcctgctggct
gatctgcacgatggcgaggtcaagctgcgctcccgcaatggtctggattggaccgatgat
tttcccgaagtggtgcaggccgtgcaggcgctgccggtgcgcgatgcacgcctggacggc
gaactggtggtgctggacaaggaaggacgcagtgacttcgcagcgttgcagcgggtgatc
gacggcagttcgaagcaaccgctgcgctacatcgtgttcgatcttccgggcgtggctgga
gcggatatcagtcgtgcgccgttgctggagcgcaaagcactcctgaaagagctcattggg
cccgcgcctggcaccctggccttcagtgagcacgtgatcgaccatggcccgcaggtgttc
gatgccagtggcaaggccggattcgaaggcaccgtcagcaagcaggtggatgccccgtac
gtgaatacccgcgcgcgcagctgggtgaaggtgaagcacgaagacaccgacgagttcctg
atcgtcggctacacggcacccaagggttcacgggtggggttcggctcgctgctgctggcg
acgccggacaagggcggcttgcgctatgtgggccgcgttggcaccggtttcgacgaccaa
agcctgcgcgcgctgctcaaggcactgcagccattggcggtgaagacgcccgtgctgcag
ctgccggcgcatgtgccgttccgcgctgccagcgtacgctgggtgaagccggtggcggtg
gccgaggtggccttccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaag
cgactgcgcagcgacaagcagaaggaggacctgggaatgagcaccgcagataccgagacc
ggaggcgaggtcgagatcactcatccggagcgggtggtgtttccaaggcagaaactgcgc
aagggtgacgtggccgactactaccagcgcatggcgcgctggatcctgcccgagattgcc
ggacgtccgctgtcactgctgcgctgcccggacggcgtgggcaaggcctgcttcttccag
aagcaccatggccccggtctgggggacgcggtacatgcggtacccctgcagcagaagagc
ggccgcgaggattacgtctacgtcgacgatgcgcggggcctgctgcagctggtgcagatg
aacaccctggaactgcatccgtggggcgcgaccgtggccgatcccgagcacccggatcgt
ctagtgttcgatctcgaccccggcgaaggggtgagctgggcacaggtgaaggccgctgcg
cgcgatgtccgtgaccgcctgcaggaggtgggcctgcagagcttcgtgcggctgtccggt
ggcaagggcgtgcacgtggtggtgccgctgcagcccaaggctggctgggacgaggccaag
gcgttctgcgaggcgttcgcgcaggcaatggcgctggagcagcctgatcgctacgtggcg
acgatgagcaaggccaagcgcggcggcgtgatcttcatcgattggctgcgcaacacacgc
ggtgccaccagcgtgtgttcgtggtcgctgcgcgcgcgcgatgctgccggcgtggcggtg
ccgctgcgctgggaagaactggcccgggtgagcgcggccgacgcgtttccgatggccaag
gcgctggcgcgcgccaagcggctgaagggtgacccatggcagggcatcgcgcggttgaag
cagaggctgccgtcgctgaagcggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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