KEGG   Schistosoma mansoni: Smp_061590.1
Entry
Smp_061590.1      CDS       T01095                                 
Name
(RefSeq) nonsense-mediated mRNA decay protein 1 (rent1),putative
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
smm  Schistosoma mansoni
Pathway
smm03013  Nucleocytoplasmic transport
smm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Smp_061590.1
   03015 mRNA surveillance pathway
    Smp_061590.1
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smm03019]
    Smp_061590.1
Enzymes [BR:smm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Smp_061590.1
Messenger RNA biogenesis [BR:smm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     Smp_061590.1
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Smp_061590.1
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD AAA_22 UvrD-helicase Helicase_RecD AAA_5 SRP54 nSTAND3 ATPase PhoH AAA_16 AAA Herpes_ori_bp AAA_7
Other DBs
NCBI-GeneID: 8348212
NCBI-ProteinID: XP_018644281
UniProt: A0A3Q0KGP9
Position
Unknown
AA seq 1325 aa
MGHMGSFDAYGPNSQALTFFDPEENDLIGGDTQGPDYDCSDFTLPSQSQTQASQLDPDKN
CFSQQHDGTNTIDVLSHRVADLDFKDEDQDDSSVDLPEHACAYCGIHDPACVVFCNTTKK
WFCNGRGNTSGSHIINHLVRARAKEVTLHKDGPLKDTLLECYVCGSKNVFLLGFVPAKSE
SVVVLLCRNICANANKDMYWDPAQWQPIIQGRQFLAWLVKVPSDEQQAKARQISAQQINR
LEEIWKENPQAAVEDLEKPGADNEVNPVLLRYENSQQYRDVFIPLVELEADYDKKIKESL
KLENVSVRWETALNKRRVAYFRIPGANEGPELRIMHGDELIIRQFNSPNDYLVGDGHVIK
VPDNFSDEVGLEMKQVIDTPLEPVTYKIEFKWKSTPFDRMRRAISVVTDEQHGLLPPYIF
YRLLGQELDDMVLKCNLPKRYSAPDLPELNHSQVFAVKTVLQRPLSLIQGPPGTGKTVTS
ASIVYHLNQIHQKKVLVVAPSNTAVDQLCEKIDRTGLKVVRLCARSREALASPVSRLMLH
IQAQNVKGHTELRKLQQLKDETGELSQDDDKRYRVLKRELERELLMAADVVCCTCVTAGD
ARLERLSFHSVLIDESTQATEPECLIPLMVGCRQVVLVGDHCQLGPVITCKKAASAGLTQ
SLFERFVLLGIRPIRLQVQYRMHPALSAFPSNVFYEGSLQNGVTAEDRCKKIDFPWPNPD
RPMFFYCTSGQEEISGNGVSYLNRTEAATVEKIVTKMLKIGVHPNTIGVITPYEGQRAYL
AHYLHYSGSLNAKLYQEIEIASVDAFQGREKDYIILSCVRANENQGIGFLNDPRRLNVAL
TRARYGLIVVGNPKALCKQPLWNQLLHFYRDQHLLVEGPLNNLGEYMLQFPRPKVPYTFK
PGGHYLAQLSANPVLLNSSQLNGQLSTHPGNQFNYLSHVSNSSQPCFDNPNGPTALVAAM
AAAAAAAYFGGSGSNTRPNVSTLGLHGSSALNQPGASHAAAYAVAAAAAAQHQSSQPYSS
QTNGSSHSMHQLLNQSLFDQVGYIGPNRQYAEANASSNLPMPLSMLMPAGRISNPTNVGN
PFGSSGHFGNGKYGTNLGAAAPLGRSIQALGPLNVHPNYSQLNTGSTRAPGGPLPGNSVP
GSAAPRYLGNARRNLQASSQNVSVGAAKSRQIDGPSSLTNVSVERGNPNTSNSGAGLLSQ
PGLSEFSGTQGTSGLSGIGVFSSQSRNSGLSGLSQESTSLDFRLGQGASQMDNLLLSQDS
TFQGATVPASKVNSQRGSNLFATRSEDHTNINFDSGLVNGTDLENIGVSQNAVSCASSGA
PLSQF
NT seq 3978 nt   +upstreamnt  +downstreamnt
atgggccacatgggttctttcgatgcttatggtccgaattcgcaagccttgacgttcttt
gaccctgaagaaaatgatttaattggaggagatacacagggacctgattatgattgttct
gatttcactctgccttcacagtctcaaacacaagcatcccagcttgaccctgataaaaat
tgcttttctcaacagcatgatgggaccaatactattgatgtattgtctcatcgtgttgct
gacttagatttcaaagacgaggaccaagatgactctagtgtcgatttaccagagcacgca
tgtgcttattgtggtattcatgaccctgcttgtgtagttttttgtaacaccacaaaaaag
tggttttgcaatggccgaggtaacacttcagggagtcatatcatcaatcatcttgttaga
gctcgtgcaaaagaagtaactttacacaaagatggacctttaaaagatacacttttggaa
tgctatgtatgtgggtctaaaaatgtattccttcttggttttgtgccggcgaagtctgag
tctgtcgtcgtacttctgtgtcgtaacatctgtgctaatgccaacaaagacatgtactgg
gatcctgcccagtggcaaccgataattcaaggacgtcagtttcttgcttggcttgtgaaa
gttccaagtgatgaacagcaagcgaaagctcgacagatatccgctcaacaaataaaccga
ctggaagaaatatggaaagaaaatcctcaggcggcagtggaggatctagaaaaacccggt
gcagataacgaagttaacccagtgttgttgagatatgagaattctcaacagtatcgagat
gtattcatacctttagtggaattagaggctgactacgataaaaagatcaaagaatcactc
aagttggaaaatgtttccgttcgttgggagactgcccttaacaaacgccgggtggcttac
ttccggattcctggagctaatgaaggcccagaactacgtattatgcatggtgatgagctg
atcattcgtcaatttaacagcccaaacgactatttagttggtgacggtcatgttatcaaa
gtacctgataatttcagtgatgaagtcggtttggaaatgaaacaagtgattgatacacct
ctagagcctgtgacgtacaaaatcgagtttaaatggaagtcaactccattcgatagaatg
cgacgagcgatctctgtcgtcaccgacgaacaacacggtttattaccaccatacatattc
tatcgattacttggtcaagaattagatgatatggtgttaaaatgcaacttacctaaacgc
tattctgcaccagacttaccggagcttaatcacagccaagtttttgccgtcaaaacagtt
ctccaacgtccacttagtctgatacagggtccgcccggaacaggtaaaactgtgacatct
gcatcaatagtttatcacttgaaccaaatacatcaaaaaaaggtattggttgtagctcct
agcaatactgcagttgatcagttgtgcgaaaagatagaccgtaccggattaaaggttgtg
cgcttatgtgcaagatctagagaagctctagcatctcctgtcagtcgtcttatgctacat
atacaggctcaaaatgtaaaaggtcatactgaactccgaaagttacaacaattaaaagat
gagactggtgaacttagtcaggatgatgataaacgttatcgggttctaaaacgggaactt
gaacgggaactccttatggcagctgatgtggtttgctgcacatgtgtaactgctggtgat
gcgcgtctggagcgcttaagttttcattcagttttaattgacgagtctactcaggctact
gaaccagagtgtctaataccattaatggtaggctgtcgccaggttgttctagttggtgat
cattgtcaattgggacctgtaattacgtgtaaaaaagctgctagcgccggactaactcag
agtttgtttgagcgatttgttctactgggtattcgacctatacgtctacaggtccagtat
cgtatgcaccccgctctttcagcctttccaagcaatgttttttacgagggtagcttgcaa
aatggagtgacagcagaggatcgttgcaaaaagatcgatttcccttggccaaatccagac
aggcctatgtttttctactgcacatctggacaggaagaaatatccggtaatggtgtatca
tatctaaatcgaacagaggcagcaacagttgaaaaaattgtcacaaaaatgctgaaaata
ggtgttcatccgaatactattggtgtgatcacaccttatgagggacaacgtgcatactta
gcgcattatcttcattattctggttccttaaatgccaaattgtaccaagaaatcgaaatc
gctagcgtggatgctttccaggggcgagagaaggattatatcatcttgtcatgtgtccga
gcaaatgaaaatcaaggtattggttttctcaatgacccacgccgtttgaatgttgccctc
acccgtgctcgttacggattaatagtagtcggaaatccaaaggctttgtgcaagcaacca
ctttggaaccagctgctacatttttaccgtgatcagcatttactcgtggagggaccctta
aacaatctaggtgaatacatgttacagtttcctagacccaaagttccatacactttcaaa
cctggtgggcattatctggcacagctttctgcaaatcccgttttattaaatagcagtcag
ttaaatgggcaattgagtacacaccctggtaatcaatttaattatctttctcatgtttca
aattcgtctcaaccatgtttcgataaccctaatggacctacagccttagtggcagctatg
gcggcggcagctgctgcggcttactttggaggatctggttcaaatactcgcccgaatgtc
tcgaccttaggattacatgggtcctcagcactcaaccagcctggggcaagccatgctgca
gcttatgctgttgccgctgctgcagctgctcaacaccaatcaagtcaaccgtattctagt
caaacaaatggtagttctcacagtatgcatcaactactaaatcaatcattatttgaccag
gttgggtatataggaccaaatcgacaatatgcggaagccaatgccagttcaaatcttcct
atgccactcagcatgttaatgcctgctggtcgaatatcgaatcctaccaatgtaggaaat
ccttttggctcttctggtcattttggcaatgggaaatatggtaccaaccttggggcagct
gcgccacttggtagatcaatacaagctttaggtccactaaatgtgcatcccaactactct
caattgaatacaggaagtacaagagcacctggaggtcctcttcctggaaatagtgtgcct
ggttctgcagctcctcgatatcttggaaatgcacgtcgaaatttacaagctagttcacaa
aatgtttctgttggcgccgcgaagtcacgtcaaattgacggacccagtagtttgaccaac
gtttctgtggaacgcggtaatcccaatacttccaactcaggtgctggtctactttctcag
cctggtttgtcagaattttctggaactcaagggacatctggtcttagcggcataggtgta
ttcagtagtcagtcgcgcaattcaggactttccgggttatctcaggagagcacttcgttg
gactttcgtcttggtcagggtgccagtcaaatggacaacttgcttctttctcaagattct
acgtttcaaggtgcaactgtacctgcgagcaaagtaaattcacaaaggggatcaaatctg
tttgctacgagaagcgaagatcataccaacataaatttcgactctggtctggttaatggg
accgatctagaaaacattggtgtctctcaaaacgcagtcagctgtgcgagcagtggtgca
ccgctctcgcagttttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (21)   
   Pfam (21)   
All databases (78)   

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