KEGG T01095: Smp

Schistosoma mansoni: Smp_082790

Entry

Smp_082790 CDS T01095

Definition

tfiih polypeptide

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

smm Schistosoma mansoni

Pathway

smm03022	Basal transcription factors
smm03420	Nucleotide excision repair

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:smm03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:smm03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3 Anthrax_toxA

Other DBs

NCBI-GI:

256086358

NCBI-GeneID:

8343425

GeneDB:

Smp_082790

AA seq 486 aa
MGVHSCSSIFEYLKNVGVHMLDELYTHPPTCLVVFRELPELAKHFVMRLLFIEQPIPKSI
VSGWVEKGSIALLNDSCKALTDLRIWHSTDSNVSRGSWSLNKRYQESIRISLFGGGKPLL
GDLGVVTNDKYSKSVDFLKSYAAERWDAILHFMVGSESAEVGSVVKDVLLLSNLMKCEGN
DCPIGITKHGFHFLLMSRQFQVLVFILHYFDYLKENSKNLVGALQFVFQLSFLCPTKSYP
VEALSTAQQEVLQHMRELGLAYQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSG
VIPTGVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIR
ARFPNLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWE
LERDRFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFW
KHKRPS

NT seq 1461 nt +upstreamnt +downstreamnt
atgggtgtccattcatgttcatctatatttgaatatctcaaaaatgttggtgttcatatg
cttgacgaattgtacactcatcctccaacatgtcttgttgtttttagagaattacctgaa
ctggcgaaacattttgtcatgcgacttttatttattgaacaaccgataccgaaatctatt
gtctctgggtgggttgaaaagggttctattgcacttctaaatgactcatgtaaagctttg
accgatttaaggatatggcattctacagacagtaatgtttctcgaggctcttggtcttta
aataaaaggtaccaagaatctattcggatatcactattcggaggtggaaaacccttactt
ggagatttaggcgttgtgacaaacgataagtactcaaaaagcgttgactttttaaaatct
tatgcagctgaacgatgggatgctatacttcactttatggtaggttctgaatcagcggaa
gttggaagtgttgtgaaggatgtccttttattgtccaatttaatgaaatgtgaaggtaat
gattgtccaatcggtatcacaaagcacgggttccatttcttgcttatgagtcgacagttc
caggtgctagttttcatcttgcactactttgactacttgaaggaaaatagtaaaaattta
gttggagccctacagttcgtcttccaacttagttttttgtgtccgacaaagagctatcca
gtagaggcactgagtactgcccaacaggaagtattacaacatatgcgcgaactcggttta
gcttatcaacgaaaacgtacagcgcctcgtttctatgtaactcctcttgctttggatttc
gctggaggtcatactactttcttggaaagtaaatcaggtggatggggtccacaatcgggg
gttattcctactggtgtctcaaaatcagatcccaccgacagcaataaaatgttttcgcag
atttcagtatcgaattcttccgatgttggttacattttgctcgaaaccaattttcgacta
tacgcctatacagattcaccgcttcgtactgctcttcttagcttatttagcaaaatacgt
gcacgttttcctaatcttgttgttgctgatataacccgtgactcagttcgggaagcatta
attcgtggaataactgcaaatcagatcctatctttcttaacagccaatgcacatccagat
atgttactacagaatcctatattaccgcctactttaaccgatcaaatacgactatgggaa
ttagagcgagatagatttctatttcaagaaggctgtctgtatgaacaattctctcggaat
acagattttgaaatggttcgggattatgctaaaagtattggtgttttactctgggaaaat
cctgaacgaagacttatggttgtgtctaaagcaggtcatgaagatgtacggaaattttgg
aaacacaaacgtccgtcctaa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   GENEDB-SMM (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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