KEGG   Schistosoma mansoni: Smp_086460
Entry
Smp_086460        CDS       T01095                                 
Name
(RefSeq) tho2 protein, putative
  KO
K12879  THO complex subunit 2
Organism
smm  Schistosoma mansoni
Pathway
smm03013  Nucleocytoplasmic transport
smm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Smp_086460
  09122 Translation
   03013 Nucleocytoplasmic transport
    Smp_086460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smm03019]
    Smp_086460
   03041 Spliceosome [BR:smm03041]
    Smp_086460
Messenger RNA biogenesis [BR:smm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     Smp_086460
Spliceosome [BR:smm03041]
 Complex C
  Other components
   EJC/TREX
    Smp_086460
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Smp_086460
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 ABC_tran_CTD VMAP-M1
Other DBs
NCBI-GeneID: 8347695
NCBI-ProteinID: XP_018647209
Position
Unknown
AA seq 1726 aa
MSDKFSVPHNCFGFQKSLTKCKEGGVTASVKLFTDLVLKLINGEGKIDILVKLVPELFKI
FGGNESFESDLLDSLWLIDSSIADINSELVRDRFYRLIEILRNHVNPALIMERFCEDTLE
NLSFIQSKQQFQTRYVRTKTRLFFKQQKFNLLREENEGYAKLITELCQITSTASMEAVMI
QIRSLIGYFDLDPNRVLDLILDVCEFRGDMYEEFVQLIRLYNPDRIDMTNILGHKYHFTQ
EPGVNTPESLYKVSAFLIWKKLIDLDVLYGHLTPSDADIQQSHNRQINLAKSYRPQPPAS
LSYSATSAINTSLNTAISNDLIRVDGLLSQDSQLGGGANSAVSGTLMTNDWNGPRTSGAL
NSRSVDELMQLEENSDVNLSKINSHDVADVGMIDISIDQDGLYENNQKLELCAAMVRLGD
WTNAQRLLERLPGYWATTYEPLTRDICNLLHCLIEPLYNKACPLPACLQRNRSRPRIESF
KALNTYIILDGIDEKSSVDCEINEVNRTITNNNNNNNNCILLSPVHDFVDLAKYVIPIAI
YLGPHMSYDLILIVKFCRLGQIYLSEQQQNLRSDKIGIVYQGFFNLLDEVLLPSLSLVDA
NCCLAEEIWQMLRFMPYEHRYRLYGQWKHFNVQSEPSLIRRRAQVICYAKAIMKRLSKEN
VKPMGRHLGKLSHSNPGLLFDHVLHTVQLFTNLINPVVEALKYVSSLGYDMLTFCIIEAL
ATDQSKLEDLQLSQGLQALSLFTGLLCRKYQFDLAGLLQYVLNQLKVGKSYDLAILREIL
HRMSGIDISEEMTEEQLESMSGGELLLQEGGYYAQIRNTRRNAGRLKDALVEHNLIMPFI
FLMAQQRDAIIFLDDPERHCKLAGRLYDQCQGTLVQFITFLSLQLTRDEMQTQCLNIDRM
MGEFHVPADTAFCFHRNLFEQKVAVGFKEQLLKASQTRHSSASLHVCNEIAAAIRPLYPA
RVWDELGIVFFITFWSLQSSDLVVPESAYQRQIQQLKEQIQQIDTPASGWNSTKKKREIE
RLENLIERLTNEQAEREEHVARVRAWLMTERDNWFQTRLATKTDTITQFLQLCIYPRVCF
TATDAIYAAQFMHVLHQLKTARFSTLICLDRIFNDITLPTSMCTENEAHRYGRFLCAVLE
LVMRWHASEEVFNQECGQYPGFVTVFRKVSLDANTKPDQLQYENYRHVVHKWHYRITKAI
VACLESGNYVQIRNALIVLTRILPQYPKITQFGSAVERRVNKLKDEEKDRRPDLKALAFS
YAGLMRPRKVKWVSEEEFHLKETKSIRSETNTNYSSNHQSINSSGTTNRTVSNSDNNSGT
TVNSTSYSHNPRGHSGSNQLTSFSNPPSNVNSTGGGITNTSTSSSGGNNTTFVTSISNSS
SSSATHEPPHTSVSVRRTSIQQPPSNQTGKISSNSTVTPSGSVPETRSRPQTVNTSITAV
ESSKCNPSGQPSGSVSLSSVTAVSNSSSSNNLSNNSPSVPTTTQSKLRSSQRFESSLPPP
DEDVTTLPGPQSHSSKRRRMEAASASLTNPNGCILNVTTSKASVNTVDEPRESHKSSTRK
RSTPTSIPGSAPITPENAIQNLRYTNAGIISNTVPSLNSVNSSSGGSSGTGSRSTASPGE
NIYPVNSSLRHHHHHQSRQSSHQRASSGNSTESREPSLENERNLIASSSAGLVKKAKKAH
HHHHHQRSSLDSSNMESNLNNNNNSPGSVTIYSISDSQGSSRHSRR
NT seq 5181 nt   +upstreamnt  +downstreamnt
atgagtgacaaattttcggttccacataactgttttggatttcaaaagagtttaacaaag
tgcaaagaaggtggggtgactgcatctgtcaaattgttcacggatttggtattgaagttg
ataaatggagaagggaaaattgatatacttgtcaaattagttcctgagctatttaaaata
tttggtggtaatgaatcctttgaatccgacctgttagactcactctggttaattgactcg
tcaattgctgatattaattcagaattagttcgagatcgtttctatcggttaatagaaatt
cttaggaatcatgtgaatcctgctttgataatggagaggttttgtgaagacaccttggaa
aacctgtcattcattcagtcgaaacaacagttccaaacgcgttatgttcgtactaaaacg
cgtttatttttcaaacaacaaaaatttaatttgttacgtgaagaaaatgaaggctacgcc
aaactgatcacagaattgtgtcaaataacgtcaactgcgtcgatggaagccgtcatgatt
cagattcggtcattaattggttattttgatttggatccaaatcgtgtcctggacttaata
ttggatgtttgtgaattccgtggtgatatgtacgaggaattcgttcagttgataagactt
tacaatcctgatagaatagatatgactaatatattgggacacaaatatcattttacacaa
gaacccggtgtcaatacgccagagtcattgtacaaagtttcagcatttttaatttggaaa
aagctaattgacctggatgtattatacggacatttaactccatccgatgcagatattcag
caatctcataatcgtcaaattaacttggctaaatcttatcgaccacaacctcctgcaagt
ttatcttattcagcaacttcggcgatcaatacctcgttaaatactgcaattagtaatgat
ttaattcgtgttgatggtctattaagtcaggattctcaacttggtggtggtgctaatagt
gctgtttctgggacattgatgacaaacgattggaatggtcctaggacgtcaggagcgcta
aattctcgctctgtagacgaacttatgcaattggaggagaattccgatgtaaatttgagt
aaaatcaattcacatgatgttgctgatgttggtatgatagatataagtattgatcaagat
ggattgtatgaaaataaccaaaagttagagttatgtgctgctatggttcgtttaggcgat
tggacaaatgctcaacgtctgttagaacgcctacctggttattgggcgactacatatgaa
cctttaacacgagacatatgcaatttgttgcattgcttaattgaacctttgtacaataaa
gcttgccctttacctgcctgtttacaacgtaaccgttctcgaccgagaatcgagtcattc
aaagcactaaatacatatattattctagatggtattgatgagaaatcgtctgttgattgt
gaaataaatgaagtcaatcggaccattacaaataataataacaataataataattgtatt
ctcttatcacctgttcatgattttgttgaccttgccaagtatgtaataccgatagcaatt
tatttgggcccacatatgtcgtatgacttaatattaatagtgaagttttgtcgtcttggt
caaatatatctctctgaacaacaacaaaaccttcggtctgacaagattggaattgtttat
caaggattttttaatttactagatgaagtactacttccgtcgttgagtttggttgatgct
aattgttgtttagctgaagaaatttggcaaatgttacgatttatgccttatgaacatcga
tatcggttatatggacaatggaaacatttcaacgtgcaatcggaacctagcctaatacgt
cgacgggctcaagtcatatgctatgctaaggcgattatgaaacgattgagcaaagaaaat
gttaaaccaatgggtagacatcttggaaaattgtcacatagcaatccaggcttattattt
gatcacgtcttgcatacagttcaactctttacaaatcttatcaatcctgttgttgaagca
ttgaaatatgttagcagtttagggtatgatatgctaacgttttgtattattgaagcactt
gccacagatcaatcgaagctggaagatttacaattgagtcaaggtttacaagcgttgtcg
ttgtttactggattgttgtgcagaaagtatcaattcgatttggctggtttgttacaatat
gtactgaaccaattgaaagttggtaaaagttatgatttggcaatattacgtgaaattctc
catcgtatgtctggtatcgatatatcggaagaaatgaccgaagaacagttagaatctatg
tcaggtggtgaattactattacaagaaggtggttattatgcacagatacgtaacacacgt
cgtaatgctggacgtcttaaagatgccttggttgaacataatttgattatgccatttatt
tttttaatggctcaacagcgtgatgctattatatttctagatgatccagaacgtcactgt
aaattagctgggcgcctatatgatcagtgtcaaggtacacttgtacaattcataacattt
cttagtcttcaattaactcgtgatgaaatgcaaacacagtgcttaaatattgacagaatg
atgggtgaatttcatgttccagctgatacggctttttgttttcatcgtaatctgtttgaa
caaaaagttgctgtagggtttaaggaacaactgcttaaggctagtcagacacggcattcc
tctgcttctttacatgtttgcaatgaaatagctgcagctatacgtccattatatccagct
cgtgtatgggatgaattaggcattgtgttttttatcacattttggagtttacagtcaagt
gatttagttgtccccgaatcagcttatcagcggcaaatacaacaactgaaagagcagatt
caacaaattgatacaccggctagtggatggaattcaacaaaaaagaaacgtgaaatagaa
cgtttggaaaatttaattgaacgtctaaccaatgaacaagctgaacgggaagaacatgta
gcacgtgtacgtgcttggcttatgactgaacgtgataattggtttcaaacacgattagct
acaaaaactgatactattacacaattcttacaattatgtatatatcctagagtgtgtttc
accgcaactgatgctatatatgcggcacaatttatgcatgttttgcatcaattaaaaact
gcacgattctctacattgatttgtttggatcgaatttttaatgacataacgttgcctacc
agtatgtgtacagaaaatgaagcccatcgttacggtcgatttttatgtgcagtcttagaa
cttgtgatgcgttggcatgccagtgaagaagtattcaatcaagaatgtggtcaatatcct
ggttttgttactgtattcagaaaggttagtttggatgctaatactaagccagaccaatta
caatatgagaactatcgtcatgttgtacataaatggcattatcgtattacaaaagcaatt
gttgcttgtctggaatctggtaattatgttcaaattcgcaatgcattgattgtattaaca
cgaattctacctcaatatccgaaaatcacacagttcggaagtgctgttgaacgacgtgta
aataaattaaaagatgaagagaaagatcgacgtcctgatttaaaggctttagcattcagt
tacgctggcctaatgcgtccacgtaaggttaaatgggttagtgaggaagaatttcatttg
aaagaaactaaatcaattcgttcagagacgaatacaaattattcgagtaatcatcaaagc
atcaacagtagtggtaccactaatcgtactgtatcgaattctgacaataattctggaact
actgtcaattcaactagttacagtcataatccacgtggacattccggttcaaatcaatta
accagtttttcgaatccaccttcaaatgtaaatagcactggtggtggtatcaccaatact
agtactagtagtagtggaggtaacaatacaactttcgttactagcatcagtaattcatct
agtagttctgcgacacatgaacctccacatacttcagtgtctgttcgacgtacttcaata
caacaaccgccatcgaatcaaactggtaaaatctcatccaactcaactgtgacgccaagc
ggtagtgttccggaaacacgttcacggcctcaaacagtgaatacgtctattacagctgta
gagtcttcgaaatgcaatccttctggtcaaccatccgggtctgtgtcactgtcttcggta
acagctgtaagcaattctagtagttcgaataatttgagcaataattcaccttccgttcca
acaactacccaaagtaaattacgatctagtcaacgttttgagtcatctctaccacctcca
gacgaggatgttactactttaccgggaccacaatcacattcatcgaaacgacgcagaatg
gaagcagccagcgcgagtttgactaatcctaatggttgcattttaaatgtgacaacatcg
aaggcatcagtgaacacagttgacgaaccacgtgagtcacataaatcttccacacgaaaa
cgttcaactcccacaagtataccaggaagtgcaccgatcactccagaaaatgctatacaa
aatttacgctacacaaatgctggtataatttccaacactgttcctagtttgaatagtgtt
aattcttccagcggcggtagtagtggtactggtagtcgttcaacagcaagtcctggtgaa
aatatttatcctgttaattcttcgctacgtcatcatcatcatcaccaatctagacagtca
agtcatcaaagagcatcatcgggtaattccactgaaagtcgagaaccaagcttagaaaat
gaacgaaatttaattgcttccagttcagcaggtctcgtaaagaaagcaaagaaagctcat
catcaccatcatcatcaacgttcgtcattagattcatcgaatatggagtctaatcttaac
aataataataatagtccgggttctgttaccatatattcaatttcagattcccaaggctca
tctcgacattcacgtagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (76)   

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