KEGG   Selaginella moellendorffii: SELMODRAFT_178307
Entry
SELMODRAFT_178307 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_178307
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_178307
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SELMODRAFT_178307
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SELMODRAFT_178307
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 S1
Other DBs
NCBI-GeneID: 9655869
NCBI-ProteinID: XP_002980697
JGI: 178307
UniProt: D8SB86
Position
Unknown
AA seq 205 aa
MAKREDDLRTPGELLGLASEFNAGRGSYCHDGKIYASLVGIRHLIEAKQGSDDLRPTIEI
RREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVRQQDVRLTEIDK
VDMHSSFRPGDIIRAEVISLGDSRAYYLSTAKNELGVVSAVSVAGMPKFFLVSTKSATMV
AVSWQEMQCPLTNQREPRKVAKVVT
NT seq 618 nt   +upstreamnt  +downstreamnt
atggcgaagcgggaagacgatctccggacgccgggcgagctgcttggcctggcgtccgaa
ttcaatgccggcagaggctcctactgccacgacggtaagatttacgcctcgctcgtcggg
atccggcatttgatcgaggcgaaacaaggctcggatgatctgaggcctacgatcgagatt
cgcagggagaaggagagggacgcagtgccagaagctggatcgacagtcactgccaagatc
acgaaagtccaggcacgaatggcttcggcggatatcgtttgcgtcgggccaagggccgtg
aaggagaaattcacgggcatagtcagacaacaggatgtaaggctcactgagatcgacaaa
gtagacatgcattcttcgttccggcctggagacatcattcgagcggaagtgatctcgctc
ggagactctcgcgcttactatctttccactgcaaagaacgaacttggcgtagtttcggct
gtgagcgtcgctggcatgccaaagttcttcctcgtttctaccaaaagtgctacaatggtt
gccgtaagctggcaagaaatgcaatgtcctttaacgaaccaaagagaaccacgcaaggtc
gcgaaggtggtcacttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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