KEGG   Selaginella moellendorffii: SELMODRAFT_269256
Entry
SELMODRAFT_269256 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K13126  polyadenylate-binding protein
Organism
smo  Selaginella moellendorffii
Pathway
smo03015  mRNA surveillance pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SELMODRAFT_269256
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_269256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_269256
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_269256
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     SELMODRAFT_269256
   mRNA cycle factors
    Stress granule specific factors
     SELMODRAFT_269256
Spliceosome [BR:smo03041]
 Complex C
  Other components
   Complex C specific factors
    SELMODRAFT_269256
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded Nup35_RRM
Other DBs
NCBI-GeneID: 9658094
NCBI-ProteinID: XP_002987288
JGI: 269256
UniProt: D8SVF1
Position
Unknown
AA seq 567 aa
MAQETSPPRSPFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAY
VNYNNTQDASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSGNLFVKNLDKSIDNKALH
DLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVR
RQERDPPASKFNNVFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFE
NPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTNLYLKN
LDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIG
SKPLYVAMAQKKEERKAKLEAQFASRGPVNFPPPPLYSAVGQQLLYSRPAPMVPQQPAGF
AMVRPNVGQMPGFFPPQRQQGHARVPFQQFMQRESTFHGSNSRTPAYGNNSFLAVLASHL
ASATPEQQRIMLGEQLYPLVDCIEHNHAGKITGMLLEMDQTEVLHLLESPEALNLKVSEA
MEVLRDSQQRLIPPDLASLSLDDPLMS
NT seq 1704 nt   +upstreamnt  +downstreamnt
atggcgcaggaaacctcgccgcctcgctcgcccttcgcgtcgacggctctctacgtgggg
gacttggatcccagtgtcaacgaagctcagatcttcgacattttcaagcaaatcgggaat
gtcatgtctgtgaggctgtgccgcgacatggttaccaagcgctctctgggatatgcctat
gtcaattacaacaacacccaagacgcttctcgagcgatagaggagctgaatttcatgccg
gtcaatgggaagcctgtgaggataatgttctcatatcgtgatcccagtattcgcaaaagt
ggctccgggaacttgttcgtcaagaatttggataagagcatcgacaacaaggctctccat
gatctgttttcaccttacggcaagattctctcgtgcaagatcgccctcgatgtatccaac
gtctccaaaggtcatgggttcgtccagtttgacaccgaagacgccgctcacacggcgatt
gagaagatcaatggtacaactttacacgacaagcagctctttgtgggaccttttgttcgt
cgacaggaaagagaccccccggcttccaagttcaacaacgttttcgtgaagaacctgtcc
gagatcactaccgacgaggacctccagaagcttttcggggtctttggtcccattagtagt
gcggtggtgatgaaggaggtggatggcaagtcaaagtgtttcggctttgtcaactttgag
aaccccgaggacgctgttaaggctgtggaagatctgcacgggacaaccttccaggacaag
gagctgtacgttagccgtgcacagaagaagaacgagagggaggcggagctgaaagccaag
ttcgagcacgagcggaaagacaccgaggacaagtcaccgacgaatttgtatctcaagaac
ttggacgacggcatagacgatgagaagctcaaagacatgttctcggcgtttggaaacgtg
acttcgtgcaaggtaatgagggaccctctcgggcacagcaaaggctccgggttcgttgcc
ttcagtacctccgacgcggcactccgagcagtggctcaaatgaacgggaagatgattgga
agcaagcctctttacgttgccatggcacagaagaaagaagagaggaaagccaaactagag
gcgcagtttgcctcacgaggccccgtcaactttcctccaccgccgctctattccgcagtt
ggacaacagcttctttacagccggccagcaccaatggttcctcaacagcctgcaggtttt
gcaatggtgaggcccaatgttggacagatgcccggtttctttcctcctcaaaggcagcag
ggtcacgcaagggtcccgttccagcagtttatgcaacgggaaagcaccttccacggtagc
aactctaggacgcctgcgtacggaaacaactcgttcttggcggtcttggcgtctcatttg
gcatccgcaacgccggagcagcaacgcataatgttgggcgagcagctgtatccactggtt
gactgcatagagcacaaccacgccgggaagatcacgggcatgctcctggagatggaccaa
accgaggtacttcacttgctcgagtctcccgaagctctcaatctcaaggtttccgaggcc
atggaggtgctgagagactcgcaacagaggctcatcccgccggatcttgcatcactctcg
ttagatgatccgctgatgtcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (53)   

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