KEGG T01496: SELMODRAFT

Selaginella moellendorffii: SELMODRAFT_403534

Entry

SELMODRAFT_403534 CDS       T01496

Name

(RefSeq) hypothetical protein

K03257

translation initiation factor 4A

Organism

smo Selaginella moellendorffii

Brite

KEGG Orthology (KO) [BR:smo00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_403534
   03012 Translation factors [BR:smo03012]
    SELMODRAFT_403534
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smo04147]
    SELMODRAFT_403534
Messenger RNA biogenesis [BR:smo03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     SELMODRAFT_403534
   mRNA cycle factors
    Stress granule specific factors
     SELMODRAFT_403534
Translation factors [BR:smo03012]
Eukaryotic type
  Initiation factors
   eIF-4
    SELMODRAFT_403534
Exosome [BR:smo04147]
Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   SELMODRAFT_403534
  Exosomal proteins of bladder cancer cells
   SELMODRAFT_403534

SSDB

Motif

Pfam:

Helicase_C

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

JGI:

UniProt:

Position

Unknown

AA seq 645 aa
MEDPVCFHRQAAAALELLVPSSIPCLRQSVLSRRQAPIQSQREPDAFSLEDFLFGYHGII
LNCSVVPGDLSKHNVWEDICSIYQEIRCKDFKDAPPPVKAVRLLELLLRLVRPRSNVLDN
VLVVTAPDNVRHFVEVLRCYYHPWTLVGSMEEHQWMLDRLDIVVASPREARKLKASITLL
ALVLVDDDKPEFFSQVMDLVESLLSFSLPTSLKSSPCRPAKVDVINYLAPWKAVNMSKEL
RRAIELSIPEAACCSGLLDPCFRNAVQMFSVFRRNVVCQDWSGIVAFMPGLIPDSTSTAS
IVLAPGHRIPQLAELLQAFVDGLGLFEVQVACLPAITNELSPRIVLGTPDRMHEALCGGS
TTWKPHRAVLVETDVILSTHKVHVEAICSNLWSHDVILGIHSLDPSPDVEDIVTRFCKGE
TTRIPRPGITLSSVKHFYAAVKSASDKLAKLGEVWKLFRTRSDTVTVYCNSVSQVELVAS
GMESAGFEVAATHTGMPKHCIEETNRAFCQRGLLLITNIIYSGGRQHVINFDMPESADEY
LARAGVQSRLWTRKVVSICSELEVCLLHEFERSLGFEADLLVARDHRLNGKKPPRLEIGK
RKNNVTGSLDEKGGEPALSLKFVCCTSLRGALVSRLISWLQETIV

NT seq 1938 nt +upstreamnt +downstreamnt
atggaggatcccgtgtgtttccatcggcaggcagcggcagcgctggagctcctggtgccg
tcaagcatcccttgtcttcgtcaatcggtgctatcccgcaggcaagctccaattcaatcg
cagcgagagcctgatgctttctctctcgaggatttcctctttggctaccatggcatcatc
ctcaactgctctgtcgtccctggcgacttgtccaagcacaatgtctgggaagacatctgc
tcgatctaccaggagatccgctgcaaagacttcaaagacgctccgcctccagtcaaggcg
gtgcgcctcctcgagctactgctgcgtttggtcaggccgagatccaacgtcctggacaat
gtgctcgtcgtcacagctccagacaatgtgagacactttgtggaggttttgcgttgctac
taccacccttggacgctggtgggaagcatggaggagcaccagtggatgctggatcgtctg
gatatagttgtggcgagccctcgagaggctcgcaagctgaaggccagcatcacacttctc
gcgcttgttctcgttgacgacgacaagcccgagtttttcagccaggttatggacctggtg
gagtccctcctgtctttcagcctcccgacatcactgaaatcttccccttgcaggcctgcc
aaggtggatgtaatcaattaccttgctccctggaaagcggtcaacatgagcaaagagcta
cgccgggctatagagttgtcaatcccagaagcagcgtgttgctctggtttgctcgacccg
tgcttccgcaatgcggtccagatgttctccgtgtttcgacgcaacgttgtgtgccaggac
tggtctggcattgtggccttcatgccgggcctcattcccgattccacaagcactgcttca
atagttctcgctccaggccacaggattcctcagcttgcggagctgttgcaggctttcgtg
gacggcttgggactgtttgaagttcaagtggcatgcctcccagcgatcacgaatgaactt
tcacccagaattgtcctcgggactccggacaggatgcacgaagcactgtgcgggggcagc
acgacttggaagccacacagagcggtcctggtggagacggatgtgattctttcgacacac
aaagtacatgtggaggcaatatgctccaacctttggagccacgacgtgatcttggggatc
cactcgctagacccatctcccgacgtagaagacattgtaacaaggttttgcaagggcgag
actacaaggattcccaggccaggcatcaccttaagctcagtcaagcacttctatgcagct
gtcaagagcgccagtgacaagctcgccaagctcggggaagtgtggaagttgtttcggacc
aggagcgacacagtgacagtctactgcaactcggtatcgcaggtggaactggttgcttct
gggatggaaagtgcgggttttgaagtggctgcaacgcacactggcatgccaaagcactgc
attgaagagacgaatcgggctttctgtcagcgtggtttgcttctaatcaccaacataatc
tacagcggcgggaggcagcatgtgatcaactttgacatgcccgagtctgcggatgagtac
ttagcgagagcaggcgtacaaagcagactttggacgagaaaggtggtgagcatctgctct
gagcttgaagtttgtttgctgcacgagttcgagaggagccttggttttgaggccgatctc
ctggttgcaagagaccatcgtctgaatggaaagaagccaccacggctagagataggcaag
agaaagaataatgttacaggctctttggatgagaaaggtggtgagcctgctctaagcttg
aagtttgtttgctgcacgagtttgagaggagccttggtttcgaggctgatctcctggttg
caagagaccatcgtctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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