KEGG   Sinorhizobium meliloti BL225C: SinmeB_0926
Entry
SinmeB_0926       CDS       T01884                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
smq  Sinorhizobium meliloti BL225C
Pathway
smq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SinmeB_0926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smq03019]
    SinmeB_0926
   03016 Transfer RNA biogenesis [BR:smq03016]
    SinmeB_0926
Enzymes [BR:smq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SinmeB_0926
Messenger RNA biogenesis [BR:smq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SinmeB_0926
Transfer RNA biogenesis [BR:smq03016]
 Prokaryotic type
  tRNA degradation factors
   SinmeB_0926
SSDB
Motif
Pfam: RNB S1 CSD2 HTH_12 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AEG03856
Position
complement(977376..979745)
AA seq 789 aa
MTRIPRDPTETPAKGAGKKNGRAARTAPAGEKETIVHGVVPSREVLMRFIAENPQHASKR
EIAKAFGLKGEARVELKGLLRSLEEDGLVEKKRKSLVRPGGLPPVTVLDITIRDVDGDLI
GRPAEWLDDDGVAPAVLIKQSSVARAKGKTPVGGLGDRVLAKIFPAKERGGPAYTARIIK
VLDKRKDAVLGVFRATPGGGGRLMPIDKRGEELLIDPEFIGDAKEGDLVEAHLSRIGRYG
LPRAQVQNVIGSVASEKAISMIAIHAHGIPHVFPERVLQEAEAARPATMAHREDWRTLPL
ITIDPADAKDHDDAVYAEPDSSPDNPGGVIVTVAIADVSWYVRARSALDLEALKRGNSVY
FPDRVVPMLPERISNDLCSLKEGVDRPALAVRMRFSKEGRKAGHTFHRIMMRSAAKLSYQ
QAQTAIDGAPDDKTGPILDTILKPLWEAYRTLTRGRERRQPLELDVPERKIILKPDGTVD
RVFVPERLDAHKLIEEMMIQANVAAAETLEQKRQVLIYRVHDQPSLAKQESLREFLATLD
IALAKGGNMRANHFNGILAKADGKPYETIVNQMVLRSQSQAIYSPENIGHFGLNLLRYAH
FTSPIRRYADLIVHRALVSALGLGEGGIMPEEEAALDDIAAEISTFERRAMAAERDTIDR
LIAHHLNGRVGEEFDGRVSGVTKAGLFVTLPAYGADGFIPISTLGRDYFIYDEAHQALSG
EKSGLGYRLGDPVQVKLVEAVPLAGALRFEMLSEGRKMPTAMRSFHKAGRRDRTGARKRP
GTRPPRGRH
NT seq 2370 nt   +upstreamnt  +downstreamnt
ttgaccaggattccgcgcgacccgaccgaaacgcccgcaaagggcgcaggcaagaagaac
ggccgcgcggccaggacggcaccggccggagaaaaggagacgatcgttcatggcgtcgtt
ccttcccgcgaggtgctgatgcgcttcatcgccgagaacccgcaacacgcctcgaagcgc
gagatcgccaaggcgttcggcctgaagggcgaggcacgggtagagctcaagggactgctg
cgatcgctcgaggaggacgggctcgtcgagaagaagcgcaagtcgctcgttcgccccggc
gggctcccgcccgtcaccgttcttgacattaccattcgcgacgtcgatggcgacctgatc
ggccggccggccgagtggctcgacgacgacggcgtcgcgcccgcagtcctgatcaagcaa
tcaagcgtcgccagggccaagggcaagacgccggtaggcggtctcggcgaccgggtgctc
gcgaagattttcccggccaaggaacgcggcggccctgcctataccgcgcgtatcatcaag
gtgctcgacaagcgcaaggacgcggtcctcggcgtcttccgcgccacgcccggcggcggc
ggccggctgatgccgatcgacaagcgcggcgaggagctcctcatcgatccggagttcatc
ggcgacgccaaggaaggcgatctcgtcgaagcgcatctttcgcggatcggccgctacggc
ctgccgcgggcgcaggtgcagaacgtcatcggctcggtcgcgtccgaaaaggcgatctcg
atgatcgccatccatgcccatggtatcccgcacgtctttccggagagggtgctgcaggag
gcggaagccgcgcgtcctgcaaccatggcgcatcgcgaggactggcgcaccctgccgctc
atcaccatagacccggcggacgccaaggatcacgacgacgccgtctacgcggagccggat
tcgtcgccggacaatccgggcggcgtcatcgtcaccgtcgcgatcgccgacgtctcctgg
tacgtcagggcacgctcggcactcgatctcgaggcgttgaaacgcggcaattccgtttat
tttcccgaccgggtcgtaccgatgctgcccgagcgcatatccaacgacctctgctccctg
aaggaaggcgtcgaccgcccggcgcttgcggtccggatgcgcttttccaaggaaggccgc
aaggccgggcatacgtttcaccgcatcatgatgcgaagcgccgccaagctctcgtaccaa
caggcgcagaccgcgatcgacggtgctcccgacgacaagaccggccccatactggatacg
atcctcaagccgctctgggaagcctatcgtaccctcacccgcggaagggagcgccgtcag
ccgctcgaactcgacgtgccggagcgcaagatcatcctgaagccggacggcacggtcgat
cgggtcttcgtgccggaacgcctcgatgcgcacaagctcatcgaagagatgatgatccag
gcgaatgtcgccgctgccgagacgctggaacagaaacgtcaggttctgatctatcgtgtc
cacgaccaaccctcgctcgccaagcaggagagccttcgcgaattcctggcgacgctcgac
atcgcgctcgccaaaggcggcaacatgcgggcgaaccatttcaacggcattctcgccaag
gccgacggaaagccttacgagacgatcgtgaaccagatggtgcttcgttcgcaaagccag
gcgatctacagcccggaaaatatcggtcatttcggcctgaacctgttgcgctacgcccac
ttcacctcgccgatccggcgctatgcggatctgatcgtgcaccgcgcgctcgtttccgcg
ctcgggctcggcgaaggcggcataatgcccgaggaagaagcagcgctcgacgatatcgcc
gccgaaatctcgaccttcgagcggcgcgccatggcggctgaacgcgatacgatcgatcgg
ctgatcgcccaccatctgaacggccgcgtcggcgaagagttcgacggacgggtttccggc
gtcaccaaggcgggactttttgtcaccctccccgcctatggcgccgacggcttcatccct
atatctacgctcgggcgcgactatttcatctatgatgaggcgcatcaggccctttccggc
gagaaatccggactgggttaccgtctcggggacccggtgcaggtcaagcttgtagaagcg
gtgccgttggccggtgcactccgtttcgaaatgctgagcgagggacgaaagatgccgacg
gcaatgcgctccttccacaaggccggccgccgcgaccggacgggtgcgcgcaaacgcccg
ggaacgcgaccgccccgcggcaggcactga

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