KEGG T00733: Smal

Stenotrophomonas maltophilia R551-3: Smal_0026

Entry

Smal_0026 CDS T00733

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

smt Stenotrophomonas maltophilia R551-3

Pathway

smt03410	Base excision repair
smt03420	Nucleotide excision repair
smt03430	Mismatch repair
smt03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:smt03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:smt03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:smt03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:smt03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S SPOR

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

31048..33525

AA seq 825 aa
MSLHQYRRKRRLGGGAGQTPEPDDTPARGDPKRRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVDVFDHGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDGEARDAEADDLLTAPMPK
RAPAAKKRSVERAAAAARTTTRKADARWHARALKLDGARDTPYPRAFKPQLTDHRDSAPD
GARWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTDDFPELVQAVLALPVRDARLDGELV
VLDPDGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRVPLLERKALLKDLIGPAP
GTLAFSEHVIDHGPQVFDASGGAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFVIVG
HTAPKGSRVGFGSLLLATPDKAGLRYVGRVGTGFDDDSLRALLKALQPLAVNAPVLQLPA
HVPFRAASVRWVKPVTVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADTEAGGE
VQITHPERVVFPKEKLSKGDVADYYQRVARWILPELAGRPLSLLRCPDGVGRACFFQKHH
GPGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVIDPEHPDRLVF
DLDPGEGVSWAQVKAGARDVRDRLQQVGLKSFVRLSGGKGVHVVVPMQPKAGWDEAKAFC
EAFAQAMALEQPDRYVATMSKAKRNGVIFIDWLRNTRGATSVCSWSLRARDGAGVAVPLR
WEELARVSAADAFPMAKALARAKRLKGDPWQGIERLKQTLPSLKR

NT seq 2478 nt +upstreamnt +downstreamnt
atgtcgctgcaccagtaccggcgcaagcgcagactgggtggtggcgccggacagacgccg
gagcctgacgacacgcccgcacgcggcgatccgaagcggcggccgaccttcgtcatccag
ctgcatcacgcaagctcgcgtcactatgacttccgcctggaaatggacggcgtactgaag
agctgggccgtgcccaagggaccttcgctgcgcgtcggtgagaagcggctggccgtggag
gtggaagatcacccgttgtcctacgccggtttcgaaggagacattcctgaaggccactat
ggcgctggccacgtggatgtcttcgatcacggcacctgggcctgtgaaggtgatccactg
caggcgctggcggctggaaagatcgacttcgtgctgcacgggcaacgcctggccggtggc
tggaagctggtgcgtacggcaatgaaagggcgtcaggtgcagtggctgctgatcaagcgc
gacgatggcgaagcgcgcgacgccgaggcggatgacctgctgacggcaccgatgccgaaa
cgagcgcctgcggcgaagaagcgttccgtagagcgtgctgcagctgccgcacgcacgacc
acacgcaaggctgatgcgcgctggcatgcgcgcgcgctgaaactggacggtgcacgcgat
acgccctatccacgcgcgttcaaaccgcagttgaccgatcatcgcgacagcgcgccggac
ggcgcgcgctggctgcacgagatcaagtgggatggttatcgcctgctggccgatctgcac
gatggcgaggtgaagctccgctcccgcaacggcctggattggactgatgattttcccgag
ctggtacaggccgtgctggcactgccggtgcgtgatgcgcggcttgacggcgaactggtg
gtgctggatccggatggacgcagcgacttcgcagcgctgcagcgggtgatcgacggtagt
tcgaagcaaccgctgcgctacatcgtgttcgatcttccgggggtggccggcgtggacatc
agtcgtgtgccgttgctggaacgcaaggcgctgctgaaggatctgatcgggccggcgccc
ggcactctggccttcagcgaacacgtgatcgaccatggaccgcaggtgttcgacgccagc
ggtggggccggcttcgaaggcatcgtcagcaagcaggtggatgcgccgtatgtgaacacc
cgcgcgcgcagctgggtcaaagtgaagcacgaagacaccgacgagttcgtgattgtcggc
cacacggcacccaagggttcccgggtgggatttggttcgctgcttctggccacgccggac
aaggctggcctgcgctatgtgggccgcgttggcaccggcttcgacgacgatagcctgcgc
gcgctgctcaaggcactgcagccgttggcagtgaatgcaccggtgctgcagctgccagcg
catgtgccgttccgtgccgccagcgtgcgctgggtgaaaccggtgacggtggcggaggtg
gcattccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaagcggctgcgc
agcgacaagcagaaagaggatctgggtatgagcacagccgataccgaagccggaggcgag
gtccagatcactcatccagagcgggtggtgtttccaaaggagaagctgagcaagggcgac
gtggccgactactaccagcgcgtggcgcgttggatcctgcccgaacttgccggacgtccg
ctgtcactgctccggtgcccggacggcgtgggcagggcctgcttcttccagaagcaccac
ggtcccggcctgggcgatgccgtgcacgcggttccgctgcaacagaagagcggccgcgag
gattatgtctatatcgacgatgcacggggcctgttgcagctggtgcagatgaacaccctg
gagctgcatccttggggcgcgaccgtgatcgatccagagcatccggatcgcctggtgttc
gatctcgatcccggcgaaggcgtcagctgggcacaggtgaaagccggtgcacgcgatgtg
cgtgaccgcctgcagcaggtgggcctgaagagcttcgtacgcctgtccggtggtaagggc
gtgcacgtggtggtgccgatgcagcccaaggcaggctgggacgaggcgaaggcgttctgc
gaggcgttcgcgcaggcaatggcgctggagcagcctgatcgctacgtggcgacgatgagc
aaggcaaagcgcaatggcgtcatcttcatcgactggctgcgcaatacgcggggggccacc
agcgtctgttcgtggtcgctgcgcgcgcgcgatggtgcgggcgtggcggtgccgctgcgc
tgggaagagctggcccgggtgagcgcggctgacgcgtttccgatggccaaggcgctggcg
cgtgccaagcggctgaagggtgacccatggcagggcattgaacggttgaagcagacgctg
ccgtcgctgaagcggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SMT (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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