KEGG T01885: SM11

Sinorhizobium meliloti SM11: SM11_chr2371

Entry

SM11_chr2371 CDS T01885

Gene name

ligD

Definition

DNA polymerase LigD ligase region

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

smx Sinorhizobium meliloti SM11

Pathway

smx03410	Base excision repair
smx03420	Nucleotide excision repair
smx03430	Mismatch repair
smx03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:smx03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:smx03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:smx03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:smx03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2

Other DBs

NCBI-GI:

384536801

NCBI-GeneID:

12310658

UniProt:

F7X3M8

Position

complement(2353292..2354329)

AA seq 345 aa
MFSKPKESIRLFAGLCVNGLMAKASSKKPRDTAPIDPMPARVDPCLATLVAKPPKGSDWA
HEVKWDGYRIAVHIEPGRVRILTRGGYDWTDRFPSIADDARRLAVKTAILDGEAVVLNDQ
GRSDFGMLQRALGRLPSAVEAGVIVFYAFDVLYLDGRDVRRLPLRERRRLLEPLVAGREG
AIRLSEEVQADGDEFFRVACAHGLEGIIAKHIDKPYRSGRGEWWQKITCKRRDSFVIVGF
EPSTVPGHLGRLLLAAHQGDELVYVGGCGTGWSHDLSRELRKLLEGMVTKKPAVALRRKG
AVFVEPLLVADVEYRAWTDDGKLRHASFKGVRERADDATVLRIDG

NT seq 1038 nt +upstreamnt +downstreamnt
atgttctctaagccgaaagagtcaattcggcttttcgcgggcctgtgcgttaatggcctg
atggccaaagcatcctcaaagaagccccgcgataccgctccaatcgatcccatgccggcg
cgtgtcgatccctgccttgctacgctggtcgccaagccgccgaaagggtcggactgggcc
cacgaagtgaaatgggacgggtaccggattgccgttcacattgagcccggccgggtgcgg
atactcacgcgcggcggctacgattggaccgatcgctttccgtcgatcgccgatgacgcg
cggcgccttgccgtcaagacagctatcctcgacggggaggcggttgttctgaacgatcag
ggccgctcggatttcggcatgctgcaacgggctctcgggcgcttgccgtcagcagtcgaa
gccggtgtgatcgtcttctacgcctttgacgttctttacctcgatggccgcgacgtgcgc
cgtctgccgctgcgcgagcgccggcgattgctcgaaccgctcgtcgccggacgcgagggg
gcaattcggctctcggaagaagttcaggcggatggcgacgagttcttccgcgtcgcctgc
gcgcacgggctggaaggcatcatcgccaagcacatagacaagccctaccgctccggccgg
ggcgagtggtggcagaagatcacctgcaagcgccgggacagcttcgtgatcgtcggcttt
gagccgtcgaccgtgcctggtcatctcggtcggctgctgctggccgcgcatcagggcgac
gaactcgtctatgttggcggctgcggtactggctggtcacacgacctgtcgcgcgagctc
cggaagctgctcgaggggatggtgacgaaaaagccggcagtcgccctgaggcgaaaaggc
gccgtcttcgtcgagccgctgctcgtcgccgacgtcgagtatcgcgcctggaccgatgac
ggcaagctgcggcacgcgtcgttcaaaggagtcagggaacgggcagacgatgcgaccgta
ttgaggattgacggctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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