KEGG   Sphingomonas melonis: BJP26_02030
Entry
BJP26_02030       CDS       T04509                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
smy  Sphingomonas melonis
Pathway
smy03030  DNA replication
smy03410  Base excision repair
smy03420  Nucleotide excision repair
smy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:smy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJP26_02030
   03410 Base excision repair
    BJP26_02030
   03420 Nucleotide excision repair
    BJP26_02030
   03440 Homologous recombination
    BJP26_02030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smy03032]
    BJP26_02030
   03400 DNA repair and recombination proteins [BR:smy03400]
    BJP26_02030
Enzymes [BR:smy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BJP26_02030
DNA replication proteins [BR:smy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJP26_02030
DNA repair and recombination proteins [BR:smy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BJP26_02030
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJP26_02030
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5 HHH
Other DBs
NCBI-ProteinID: AOW22489
Position
386823..389591
AA seq 922 aa
MPHLYLVDGSGYIFRAYHRLPPLTNRHGEPVGAVYGYTAMLWKLADELHKADGPTHMAVI
LDKSSQTFRNAMYDQYKAHRPPPPEDLVPQFPMIRDATRAFSLPCIEEEGWEADDLIASY
TRAALAQGWQVTIVSSDKDLMQLMTDPSVDMLDTMNNRRLGPDAVVEKFGVGPEKLGDVL
ALMGDSVDNVPGVPGVGPKTAAKLILEHGDVEGVLAAAASDTFKKGKLKQNLIEHAEAAR
LSRKLVELACDVPLVHPLEELELPASGIPDAPLRAFLEHHGFKTLMNRLGQVADAPVAAP
ADVPFEADPPCDHDGYETVIDATTLDRWVAEAQHQGWVAIDTETTGTDATRCDLVGVSLA
LGANKACYIPLGHGTTDLLAESPVQIDRAEALARLKTLCEDESVLKIGHNLKFDMIVLGL
AGIAVAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHSCIAYKDVVGTGKSQRGFHEIDL
KSATRYAAEDADVTYRLWKRFKARLPAEEATRIYEMVDRPLVPVIARMETRGIKVDREKL
SALSAGFSEQIAALETVIHGLAGAPFTIGSPKQLGDVLFERMGIKGGRKGKSGVYSTDVN
ELERIAADKDSPGAEIAARVLDWRQLTKLKNTYTDALQNEINPRTGRVHTSYSLTGAQTG
RLSSTEPNLQNIPIRTEVGRQIRDAFVAEPGNVILAADYSQIELRLAAHMADVPALKAAF
ANGDDIHSLTAMELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVTADEAQAMIDRY
FDRFPGINTYIAETTQSVRERGYTTTLFGRKTHFPRIRSKVQHERQGAERAAINAPIQGT
SADIIKRAMVRMEPALLAAGLPNVQMLLQVHDELVFELPEGDVEAAKPVIERVMAEAAAP
AVELSVPLGIEIGVGASWGAAH
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgccccatctctatctcgtcgacggctcgggctatatcttccgcgcctaccaccgcctg
ccgccgctcaccaaccggcacggcgagccggtcggcgccgtctatggctataccgctatg
ctgtggaagctcgccgacgagctgcacaaggcggatggcccgacgcacatggcggtcatc
ctcgacaaatcgtcgcagaccttccgcaacgcgatgtacgatcagtacaaggcgcaccgt
ccgccgccgccggaagatctggtcccgcaattcccgatgatccgcgacgccacccgcgcc
ttctcgctgccctgcatcgaggaggaaggctgggaggcggacgacctgatcgcgagctac
accagggccgcgctggcgcagggctggcaggtgacgatcgtcagctccgacaaggacctg
atgcagctgatgaccgatccgtcggtcgacatgctcgacacgatgaacaaccgccgcctc
ggccccgatgcggtggtggagaagttcggcgttgggccggaaaagctcggcgacgtgctc
gcattgatgggcgacagcgtcgacaacgtgcccggcgtccccggcgtcggcccgaagacc
gccgccaagctgatcctggaacatggcgatgtcgagggcgtgctcgccgccgcggcgtcc
gacacgttcaagaagggcaagctcaagcagaacctgatcgagcatgccgaggccgcacgc
ctcagccgcaagctggtcgaactggcctgcgacgtgccgctcgtccatccgctcgaagaa
ctggaactgcccgcaagtggcattccagatgcaccgctgcgcgccttcctggagcatcac
ggcttcaagacgctgatgaaccggctgggtcaggtcgccgacgcccccgtcgcggcgccc
gccgacgtgccgttcgaggccgatccgccctgcgaccatgatgggtacgagacggtgatc
gatgccacgacgctcgatcgctgggtcgcagaggcgcagcaccagggctgggtcgcgatc
gataccgagacgaccggcaccgacgcgacacgctgcgatctagtcggcgtgtcgctcgcc
ttgggcgccaacaaggcgtgctacattccgttgggccacggcacgaccgacctgctcgcc
gaatcgccggtgcaaatcgaccgagccgaggcgctcgcgcggctgaagacgctgtgcgag
gacgagtcggtcctcaagatcgggcacaatctgaagttcgacatgatcgtgctcgggctc
gccggcatcgcggtggcgccgcacgacgatacgatcgtcatgagcttcgacctcgatgcg
gggctccacggccacggcatggacgagctcgccgcgacgcatctgtcgcacagctgcatc
gcctacaaggacgtggtcggcacgggaaaatcgcagcgcggtttccacgagatcgacctc
aaatcggcgacgcgctacgccgccgaggacgccgacgtcacctatcgcctgtggaagcgg
ttcaaggcgcggctgcccgccgaagaggcgacgcgcatctacgagatggtcgaccgccct
ctggtgccggtgatcgcgcggatggagacgcgcgggatcaaggtcgatcgcgagaaattg
tcggcgctgtcggccgggttcagcgagcagatcgccgcgctcgaaaccgtgatccacggc
ctcgccggcgcaccctttacgatcggcagccccaagcagctgggcgacgtcttgttcgaa
cggatgggcatcaagggcggccgcaagggcaagtccggcgtctattcgaccgacgtcaac
gagctggagcggatcgccgccgacaaggattcgccgggtgccgagatcgccgcgcgcgtg
ctcgactggcgccagctgaccaagctgaagaacacctataccgacgcgctgcagaatgag
atcaacccgcgcaccggccgcgtccacacgagctacagcctgaccggcgcgcagaccggc
cgtctgtcgtcgaccgagccgaacctgcagaacatcccgatccgcaccgaggtgggtcgc
cagattcgcgacgccttcgtcgcggaaccgggcaacgtcatcctggcggccgactattcg
cagatcgagctgcggctggcggcgcatatggcggacgtcccggcgctgaaggccgccttc
gccaatggcgatgacatccactcgctcaccgcgatggagctgttcggcgaggtcaatcgc
gacacgcgcggacgggcgaagacgatcaacttcgcgattctctacggcatcagccgctgg
gggctggcggggcggctcgacgtcaccgccgacgaggcacaggcgatgatcgatcgctat
ttcgatcgcttccccggcatcaacacctacattgccgagacgacgcagagcgtgcgcgag
cgcggttacacgacgacgctattcgggcggaagacgcacttcccgcgcatccgcagcaag
gtgcagcacgaacgccagggcgccgagcgcgccgcgatcaacgcgccgatccagggcacc
agtgccgacatcatcaagcgcgcgatggtgcggatggagcccgcgttgctcgcggcgggg
ctgccgaacgtgcagatgctgctgcaagtccacgacgaactggtattcgaattgcccgaa
ggcgatgtcgaggcggccaagccggtgatcgagcgcgtcatggcggaggctgccgcgccg
gcggtcgagttgtcggtgccgctgggaatcgagatcggcgtcggcgcgagctggggagcg
gcgcattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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