KEGG T02061: SMD

Stenotrophomonas maltophilia D457: SMD_2199

Entry

SMD_2199 CDS T02061

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

smz Stenotrophomonas maltophilia D457

Pathway

smz03410	Base excision repair
smz03420	Nucleotide excision repair
smz03430	Mismatch repair
smz03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:smz03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:smz03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:smz03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:smz03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

386718587

NCBI-GeneID:

12742591

UniProt:

I0KNV1

Position

complement(2453851..2456400)

AA seq 849 aa
MSLVEYRRKRRFDQTKEPEPGKALPKGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYAAFEGEIPKGQYGGGHVAQFDHGVWATQGDPEAQLAK
GHLRFELFGTKLKGGWHLVRSGRPARQPQWLLFKDDDEFASDIEADDLLGDVAEAPPEDL
KRAGAGKAAKKRLTAVPARRARRKNWAKKALALSKAKRAAAPSGPFEPQLAKLGEAPPQG
GQWVHEIKWDGYRILATVAEGNVQLWSRNALEWTAKLPEIRDAIAALGLRSAALDGELIA
GAGTKEDFNLLQATLSGEKQGVLTYALFDLLHLDGVDVADAPLLERKTLLQSVLEGQGSP
LAFSSHVQGDGDQAYRLAGERHFEGIISKRADRSYHSGRSEDWRKTKQLASDEFAVVGYT
APKGSRTGFGSLLLARPDATHGWLYAGRVGSGFSDELIGDISKRIKGGGGRKPTAYVPTQ
DTDLRAATWFEPRFVVEVFYRGIGGQQLLRQASLKAVRADKDIADLADSDRAGAAPAAAR
SQAPARRGRRVERAPATDRAPPVLSSPGKILFPGDGYTKQDVWDYYAAVMEHLLPEVVDR
PLSIIRCPSGTAKPCFFQKHHTAGLALVDSVRLKQESGINAHYLVVRDAASLLELVQFNA
LEFHPWGSHAEAPDSADRVVFDLDPGPDVPFAEVKKAATDIRKLLAQLELESFLRVSGGK
GLHVVVPLNPGCDWDLTKRFAKGFADALAQSEPQRFLATATKSLRNKRIFVDYLRNGRGA
TAVASYSLRARPGAPVALPIAWGDLAKLKRADAFTIKDVPAKLRRRRKDPWAGIAEVKQN
LARWARADP

NT seq 2550 nt +upstreamnt +downstreamnt
atgtccctggtcgagtatcgccgcaagcgtcgttttgaccagaccaaggagcccgagccg
ggcaaggcgctgccgaaaggccagcgcgccattttcgtggtgcagctgcatcatgccagc
cgcaggcactatgacttccgcctgcaggttggcgatgcgctgaagagctgggcggtgccc
aaaggccccagttacgacccgaaggtcaagcgcatggcggtggaagtggaagaccacccg
gtggactacgcggcgttcgagggtgagattcccaagggccagtacggcggcggccatgtc
gcccagtttgaccacggtgtatgggccacgcagggcgatccggaagcccagctcgccaag
ggccatctgcgcttcgagctgttcggtaccaagttgaaaggcggctggcatctggtccgg
tcgggaaggcccgcgcgccagccacagtggctgctgttcaaggacgacgacgaatttgcc
agcgatatcgaggcagacgatctgctgggggacgtcgctgaagcgccaccggaggatctg
aagcgtgccggcgctggcaaggccgcgaagaagcggctgacggcggtacctgccagacgc
gcccggagaaagaactgggcgaagaaggccctggcgctcagcaaggcgaaaagggcggca
gcgccgtccgggccgtttgagccgcagttggccaagctgggcgaagcgccgccccagggc
gggcagtgggtgcatgagatcaaatgggacgggtaccgcatccttgctacggtggctgag
ggcaacgtgcagctgtggtcacggaacgcgctggaatggaccgccaaacttcccgaaata
cgtgatgcgatcgcggccctgggcctgaggtcggcggcactggacggcgagctgatcgcc
ggcgccggcaccaaggaagacttcaacctgctgcaggccacgctttccggcgagaagcaa
ggcgtcctgacgtatgcgctgttcgatctgctgcatcttgatggcgtggatgtggccgat
gcgcccctgctggagcgcaagaccctgctgcaatcggtgctggaggggcagggcagccca
ttggcattcagttcgcatgtacagggggatggcgaccaggcctatcgtctggccggtgag
cggcacttcgagggcatcatttccaagcgcgccgatcgcagctaccacagcggccgcagc
gaggactggcgcaagacgaagcagctggccagcgacgagttcgcggtggtgggctacacc
gcacccaaaggcagccgcaccggctttggttcgctgctgctggcccggccagacgcaacg
catggctggctctacgcagggcgcgtcgggtccgggttctcggatgaactgattggcgac
atcagcaagcgcatcaagggcggcggcggccgcaagccaaccgcgtacgtgcccacgcag
gacaccgatctgcgcgccgcgacctggttcgaaccgcgtttcgtggtggaggtcttctac
cgcggaatcggtgggcagcaactgttgcgccaggcgtcgctgaaggcggtgcgggcggac
aaggatatcgccgacctcgccgattccgatcgcgccggagcggccccggccgctgcgcgg
tcgcaagcgcccgcgcggcgtgggcgccgggtggaaagggcgccggcaacggatcgcgcg
ccccccgtgctgtcgtccccaggcaagatcctgtttcccggcgacggctacaccaagcag
gacgtgtgggattactacgcagcagtgatggagcacctcctgcccgaggtggtggatcgt
ccgctgtcgatcatccgctgccccagtggcaccgcaaagccctgcttcttccagaaacac
catacggccgggctggcgctggtcgattcggtaaggctgaagcaggaaagcggcatcaac
gcccattacctggtggtgcgggacgcagccagcctgctggaactggtgcagttcaacgcg
ttggagttccacccttggggcagccacgccgaggcgcccgacagtgccgaccgggtggtg
ttcgatctggatcccggaccggatgtgccctttgccgaagtcaagaaagcggcaaccgac
atccggaaactgctggcgcagctggaactggaatcgttcctgcgagtctccggcggcaag
ggcctgcacgtggtcgtgccgctcaacccagggtgcgattgggacctgaccaagcgtttt
gcgaagggtttcgccgatgcattggcacagtccgaaccgcagcggttcctggcaaccgcc
accaagagcctgcgcaacaagcggatcttcgtcgactatctgcgcaatgggcgcggtgca
acggcggtcgcgtcctattcgttgcgcgcccggccgggcgcgccggtggcactgccgatc
gcctggggtgatctggcgaaactcaagcgcgccgacgccttcacgatcaaggacgtaccc
gcaaagctcagacgtcgccgcaaggacccttgggccggcatcgcggaagtgaagcagaat
ctcgcccgatgggcccgggcagacccgtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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