KEGG T01258: Snov

Starkeya novella: Snov_0819

Entry

Snov_0819 CDS T01258

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sno Starkeya novella

Pathway

sno03410	Base excision repair
sno03420	Nucleotide excision repair
sno03430	Mismatch repair
sno03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sno03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sno03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sno03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sno03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme SnoaL_4

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(846383..848911)

AA seq 842 aa
MGLETYRRKRDFNTTSEPKGRTSRRAGNLYLIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGSFEGTIPKGEYGGGTVMLWDTGTWTPIGDAHVAYKKGH
LEFELDGEKLHGRWHLVRMHPRPREKKENWLLIKGEDEFARTEEQSDILEELPDSVKTGR
DLDAIAKDAPGWSSKTGRLRPAPKPKATPAKAKAASGGAAKRKTVAGAPLPDFIEPQLAT
LVDKAPSGTRWVHEIKFDGYRLEVRIEDGEVRLLTRTGLDWTARFGSRLVEAFKALPLSN
ALIDGELVVEGGNGASHFSTLQADLSEERTDRFLFYAFDLLFLDGEDLRSKPLVERKAAL
AKLLAGVPDPLRYSEHFDEDGDVMLRHACRLSLEGLVSKLADAPYRSGRSKDWRKSKCTE
RQEFVIGGYVPSTVSNHAIGSLVLGVYEAGKLGGKLRHVGRVGTGYTARVAADLWKQLQP
LARDKSPFAGKLAAEAARGVHFVEPTLVAEIEFRGWTGERNLRHASYRGLREDKPAAEVV
QEGAPEMNADRPPGSSVKLTHPDRIYWPEDGVTKQGLVDYYTQVWPKIAPFIVARPLALL
RCPDGIAEACFFQKHAWRGINKAVKLVPDPKDKGGEPLLTISDFDGLIALVQAGTLEIHP
WGAPLAGLEKPDMLIFDLDPGPGVGWPEVIAAAKEVRARLEADEMAAFVKTSGGKGLHVV
TPLSSKAGWAPAKEYAKAVADAMAADDPDRFISVATKAKRGGRIFVDYLRNARGATAVAP
YSSRARAGAAVSMPVTWAELDQLASAAQYTVDNAPTRLASLDADPWEDFRAAAKPLPAGK
KR

NT seq 2529 nt +upstreamnt +downstreamnt
atgggcctggagacctaccgccgcaagcgcgacttcaacaccacttcggagccgaaaggg
cgcacttcccgccgcgcgggcaacctctacctgatccagaagcacgacgcccgccgcctg
cattacgacttccggctggagatggacggcgtgctgaagagctgggcggtgacgcgcggg
ccgagcctggtgcccggcgagaagcgcctcgccgtgcatgtcgaggaccacccgctcgat
tacggcagcttcgagggcaccatccccaagggcgaatatggcggcggcacggtgatgctg
tgggacaccggcacctggacgccgatcggcgatgcccatgtcgcctacaagaagggccat
ctcgaattcgagctcgacggcgagaagctgcacgggcgctggcatctcgtgcgcatgcat
ccgcggccgcgcgagaaaaaggagaactggctgctgatcaagggcgaggacgagttcgcc
cgtaccgaggagcagtccgacatcctcgaggagctgccggattcggtgaagaccggccgc
gacctcgacgccatcgccaaggacgcgccgggctggtcgtccaagaccggcaggctgcgg
ccggccccgaagcccaaggccacgcccgccaaggcgaaggcggcaagcggcggcgcggcg
aagcgcaaaaccgtcgccggcgccccacttcccgacttcatcgagccgcagctcgccacc
ctcgtcgacaaggcgccgagcggcacgcgctgggtgcatgagatcaagttcgacggctac
cggctggaggtgcggatcgaggatggcgaggtgcgcctgctaacccgcaccgggctcgac
tggacagcgcgcttcggctctcggctggtcgaggcgttcaaggcgctgcccctctcgaac
gcgctgatcgacggcgaactggtggtcgaaggcggcaacggcgcgtcgcatttctcgacg
ctgcaggccgacctttccgaggagcgcaccgaccgcttcctgttctacgccttcgacctc
ctgttcctcgacggcgaggacctgcgcagcaagccgctcgtcgagcgcaaggcggcgctc
gcgaagctgctcgccggcgtccccgacccgctgcgctacagcgagcatttcgacgaggat
ggcgacgtcatgctgcggcatgcctgccgcctgagcctcgaaggcctcgtctccaagctc
gccgacgcgccctaccgctccggccggtccaaggactggcgcaagtcgaaatgcaccgag
cggcaggaattcgtcattggcggctatgtgccctccaccgtctccaaccacgccatcggc
tcgctggttctgggcgtttacgaggccggcaaattgggcggcaaactgcgccatgtcggg
cgcgtcggcaccggctacacggcccgcgtcgccgccgacctgtggaagcagctccagcct
ttggcacgcgacaagagccccttcgccggcaagctcgccgccgaggccgcgcgcggcgtg
catttcgttgagccgacgctggtggcggagatcgagttccggggctggacgggcgagcgc
aatctgcgccacgcttcctatcgcggcctgcgcgaggacaagccggccgccgaggtggtt
caggaaggggcaccggagatgaacgcagatcgcccgcccggctcaagcgtcaagctcacc
catcccgaccgcatctactggccggaggacggcgtcaccaagcaggggctggtggattac
tacacgcaggtctggccgaagatcgctcccttcatcgtcgcccgcccgctcgcgctgctg
cgctgcccggacggcatcgcggaagcctgcttcttccagaagcacgcctggcgcggcatc
aacaaggcggtgaagctggtccccgaccccaaggacaagggcggcgagccgctgctcacc
atctccgatttcgacgggctgatcgcgctggtgcaggccggcacgctggagatccacccc
tggggcgcgccgctcgccgggctggagaagccggacatgctgatcttcgacctcgacccc
ggccccggcgtcggctggccggaggtgatcgccgccgccaaggaagtacgcgcccggctg
gaggcggacgagatggcggccttcgtgaagacctccggcggcaagggcctgcacgtcgtc
acgccgctcagctccaaggccggctgggcgccggccaaggagtacgcgaaggccgttgcc
gacgccatggcggccgacgatcccgaccgcttcatctcggtggcgaccaaggccaagcgc
ggcgggcgcatcttcgtcgactatctgcgcaatgcgcgcggggcaacggcggtagcgccc
tattccagccgtgcccgcgccggcgcggcggtgtcgatgccggtgacctgggcggagctc
gaccagctcgccagcgccgcgcaatacaccgtcgacaacgccccgacgcggctcgccagc
ctcgatgccgacccgtgggaggatttccgcgcggcggcgaagcccctgccggcggggaag
aagaggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SNO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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