KEGG   Sodalis praecaptivus: Sant_3498
Entry
Sant_3498         CDS       T03004                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R (RNase R)
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sod  Sodalis praecaptivus
Pathway
sod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sant_3498 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sod03019]
    Sant_3498 (rnr)
   03016 Transfer RNA biogenesis [BR:sod03016]
    Sant_3498 (rnr)
Enzymes [BR:sod01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Sant_3498 (rnr)
Messenger RNA biogenesis [BR:sod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Sant_3498 (rnr)
Transfer RNA biogenesis [BR:sod03016]
 Prokaryotic type
  tRNA degradation factors
   Sant_3498 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 Rho_RNA_bind OB_Dis3 HTH_20
Other DBs
NCBI-ProteinID: AHF78485
UniProt: W0I1Z5
Position
complement(4004071..4006674)
AA seq 867 aa
MSQDPFLEREAEKYAFPVPSREFILAHLAKREKPASREELAQELDISGEDQLEGLRRRLR
AMERDGQLIFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDYYLSAEQMKMAIH
GDVVMAQPQGADRKGRREARIVRVLVPKTSQIVGRFFIDAGSAFVVPDDSRLSFDILIPP
EATQGARMGFVVVVELTQRPTRRTKAIGKVVEVLGDNMGTGMAVDIALRTHDIPYVWPPE
VEQQLADLKEEVPEAAKRGRIDLRALPLVTIDGEDARDFDDAVYCEKKRSGGWRLWVAIA
DVSYYVRPHTPLDQEASRRATSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSSYKFYEAVMNSHARLTYNKVWQILQGQQELRSHYAPLIKPLTQLHEMFQTLEQA
RLQRGGISFETEEAKFIFNAERRIERIEPVKRNDAHKLIEECMILANIAAARFVEKHKEP
ALYRVHDRPSNDHITSLRTVLGELGLTLGGGDKPEPKDYADMMNLVAGRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQAYAHFTSPIRRYPDLALHRAIKYLLGRQNGDVDGRATPT
GGWHSELEEMLQLGQQCSLSERRADEATRDVADWLKCDFMQDHVGQVFSGIITSVTSFGF
FVRLDELFIDGLVHVSSLDNDYYRYDNIGQRLIGESGGRVYRLGDAVEIRVEAVHMDERK
IDFSLISSRRQPRGAGKTERQRQQQAARGANDGKPPRRRSSSKQPANFEPDSAFRPTGKG
GDKPGGGRGKRQRGGAQTTQGAQATQPAAHGAGRGKGGHASSAPAKPSTEDTSRKKTSAE
GATRNKAAGGKTRRRRKPAAASGRSEN
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgtcacaagatccctttctggaaagagaggcagaaaaatacgcgttcccggtgccaagc
cgagaatttatcctcgcccatttagccaagcgggaaaaacccgccagccgcgaggagttg
gcgcaagaactggatatcagtggtgaagaccaactggaaggcttgcgccgccgcctgcgc
gcaatggagcgtgacgggcaactgattttcacccgtcggcagtgctatgcgctaccggag
cgtctggatttgttgcgcggtacggtcatcggccatcgagacggtttcggtttcctgcgc
gtcgaaggcagcaaggacgattattatttgtccgccgaacagatgaaaatggccattcat
ggcgatgtcgtcatggcgcagccgcagggcgcggaccgcaaaggccgccgcgaggcgcgc
attgtgcgggtgctggtgccgaaaaccagccagatcgtgggccgctttttcattgacgcc
ggcagcgcgttcgtggtgccagacgatagccgtctcagtttcgatatcttaatcccgccg
gaagcgacccagggcgcccgcatggggttcgtggtcgtggtggagctgacccagcgcccg
acgcggcgcaccaaagccatcggcaaagtggtggaggtgctcggcgataatatgggaacc
ggcatggcggtggatattgcgctgcgcacccacgatattccctatgtctggccgccggaa
gtcgagcagcagttggcggatttaaaagaagaggtgccggaagcggccaagcgcgggcgt
atcgatttacgcgcgctgcccttggtgactatcgacggcgaggatgcgcgcgacttcgat
gacgcggtgtactgtgagaaaaaacgcagcggaggctggcgtctgtgggtggcgattgcc
gatgtgagctactatgtccggccgcatacgccgctggaccaggaagcgagccggcgtgcg
acttcggtctatttcccctcgcaggtgattccgatgctgcccgaggtgctgtccaacggg
ctgtgctccctcaatccgcaggtggacaggctgtgtatggtctgtgagatgaccatttcc
gcccaggggcgtctctcttcctacaaattttacgaagcggtgatgaattctcacgcgcgc
ctgacttacaacaaggtctggcagatcttgcagggccagcaggaattgcgcagccattac
gcgccgctcatcaagccgctgacccagctgcatgaaatgtttcagacgctggaacaggcc
aggttgcagcgcggtggcatctcttttgagaccgaagaggccaagttcatcttcaacgcg
gagcgccgcatcgagcgtattgagccggtgaagcgcaatgatgcccataagcttatcgaa
gagtgcatgatcctggcgaatattgccgcggcgcgctttgtcgagaagcataaagagccg
gcgctttatcgcgtgcatgaccggccaagcaatgaccatatcacctcgttgcgcacggta
ttgggcgaactggggctgaccttggggggcggcgataaacctgagcccaaagattatgcc
gatatgatgaatttggtcgctggccgtccggaccacgaaatgctgcaaaccatgctgctg
cgatcgatgaagcaggcgatttatgatcctgaaaaccgcggccacttcgggctggcgctg
caggcgtatgctcacttcacctcgcctatacgccgttatccggatcttgcgctgcatcgg
gcgatcaaatatcttctcggccgacagaatggcgacgtcgatggacgggccacaccgacc
ggcggttggcattccgaactggaagagatgttgcagctcggtcagcaatgttcgctcagc
gagcgtcgcgccgatgaagcgacccgcgacgtggcggattggctgaagtgcgattttatg
caggatcacgttgggcaagtattcagcggcattattaccagcgtcaccagtttcggtttc
tttgtgcgtctcgatgagctgtttatcgacggcttggtgcatgtctcatcgctggataat
gattattatcgctatgacaacatcggccagcggctgataggcgagtccggcggcagggtg
taccggctcggggacgcggtagaaatccgcgttgaagccgtgcatatggacgaacgcaaa
atcgatttttcattgatttccagccgccgtcagccgcgcggtgccggcaaaaccgagcgc
cagcgtcagcagcaggccgcccgcggcgctaatgacggcaaaccgccgcgccgccgcagc
agcagtaaacagcccgccaattttgaacccgacagcgcattccggccgacagggaagggg
ggcgataaacccggcggcgggcggggtaagcgccagcgcggcggtgcgcaaacgacccag
ggcgctcaggcgactcagcctgcggcgcacggcgcagggcgcggcaaaggcggtcacgcc
tcttcggcgccggccaaaccgtcgaccgaggacacttcgcgcaagaaaacctccgccgag
ggcgctacccgtaataaagccgctggcggcaaaacgcgccgccgcaggaaacccgccgcg
gcttccggtcgctcagaaaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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