KEGG   Spinacia oleracea (spinach): 110774872
Entry
110774872         CDS       T05137                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03013  Nucleocytoplasmic transport
soe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110774872
  09122 Translation
   03013 Nucleocytoplasmic transport
    110774872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110774872
   03041 Spliceosome [BR:soe03041]
    110774872
Messenger RNA biogenesis [BR:soe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110774872
Spliceosome [BR:soe03041]
 Complex C
  Other components
   EJC/TREX
    110774872
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110774872
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 110774872
NCBI-ProteinID: XP_021835159
UniProt: A0A9R0HRL6
Position
1:complement(123532632..123550169)
AA seq 603 aa
MEIFRKALLNLEPPEKFALQTVQEAIKPQRQTKLVLDENQLLENILRTLLQELVSCAVQS
GDPTMHYGQSIADGDNANGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKD
IFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETTFEKEAPKGISTDFNFYKTFWSLQEYFCNPPSLTVNPTKWHRFT
SSLTVVLNTFEAQPLSDEEGNANNLEEEGAAVNIKYLTSSKLMGLELKDPSFRRHVLVQC
LILFDYVKAPGKSDKDLPSEAMKEEIKTSEERVKKLLEVTPPKGKEFLSSIEHILEREKN
WVWWKRDGCPPFEKQPAEKKVDGTKKRRPRWRLGNKELSQLWKWSDQNPNALTDPERVRT
PAVVDYWKPMADDMDPSAGIEAEYHHKNKKVYCWKGLRLSARQDLEGFSRFTEFGIEGVV
PLELLPAELRSKYQAKPNEKSKRAKKSGTKGSVPSSEDNQGTALECEMDGEGGQNDLEAP
SAAMDLDSTPITGNNSQAGTPTQDELEKQNSESPDAQEAGELDAEEDVEPGLIDGETDAD
VDL
NT seq 1812 nt   +upstreamnt  +downstreamnt
atggagatttttaggaaagccttgttaaatttggagccccccgaaaaatttgctcttcaa
actgttcaggaagccattaaaccccagaggcaaacaaagttagttctggatgaaaatcag
ttgctagaaaacattctacggacgttactccaagagttggtgtcgtgtgcagtacagtct
ggagatccaaccatgcattatggccaatccattgctgacggagataatgcaaacggtcaa
attcctcgccttctggatatcgtattgtatctctgtgagaaggagcacgtggagggtggc
atgatatttcagctattggaagatttgacagaaatgtctaccatgaagaactgcaaagat
atttttgcttacattgagagcaagcaagacatacttggaaagcaagaactgtttgctcgt
ggcaaacttgtgatgctgaggacatgcaatcaactgcttcgtcgtttgtcaaaggcaaat
gatgtggtattttgtggacgaattcttatgtttctggcacattttttcccgctatcggag
cgctcagctgtgaatatcaagggagttttcaatacatccaatgaaacaacgtttgagaaa
gaagcacctaaaggaatttctactgatttcaacttctacaagacgttctggagtttacag
gagtatttttgcaatcctccatccttgactgttaatcctacgaaatggcacagatttaca
tcaagcttaacggttgtactcaatacctttgaggctcaacccttgagtgatgaagaggga
aatgctaataatcttgaagaagagggggcagctgtcaatatcaaatatcttaccagtagt
aaattaatgggtttggagctgaaagatcctagtttccggcgtcatgttctggtacaatgc
ttgatattgttcgactatgtgaaggctcctggaaagagcgacaaagatttgccatcagaa
gcaatgaaagaagaaataaagacctctgaggagcgtgtaaagaagcttcttgaagtgaca
cctccgaaagggaaagagtttctcagcagcattgagcatattttagaacgtgaaaaaaat
tgggtgtggtggaagcgtgatggttgcccaccttttgaaaaacaacccgcggagaagaag
gtagatggtacaaaaaaacgtcggccaaggtggagattagggaacaaagaactttcccag
ttgtggaaatggtctgatcagaatccgaatgctctcactgatccggagcgagttcgtact
cctgctgtcgtagattattggaagccaatggctgacgatatggatccatctgctggtata
gaagctgagtatcatcacaagaataagaaggtttattgctggaaaggtcttcggttatct
gctcgacaggacttggaaggtttttctaggttcactgaatttggtattgaaggggttgtg
ccactggaactcctgcctgctgaactaaggtccaaatatcaggcaaagccaaatgaaaaa
tctaaacgagcgaagaagtctggaactaagggttctgtaccttcatctgaagataatcag
ggcacagccttggagtgtgagatggacggtgaaggaggccaaaacgatcttgaagctcca
tcagctgcaatggacttggattcaacacctattactggaaataattctcaagctggcacc
ccaacacaagatgagcttgaaaagcaaaattctgaatccccagatgcacaagaagctggc
gaacttgacgccgaagaagatgttgaaccggggttgattgatggagagacagatgctgat
gttgatctatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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