KEGG   Spinacia oleracea (spinach): 110775314
Entry
110775314         CDS       T05137                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03030  DNA replication
soe03410  Base excision repair
soe03420  Nucleotide excision repair
soe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110775314
   03410 Base excision repair
    110775314
   03420 Nucleotide excision repair
    110775314
   03430 Mismatch repair
    110775314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:soe03032]
    110775314
   03400 DNA repair and recombination proteins [BR:soe03400]
    110775314
Enzymes [BR:soe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110775314
    6.5.1.6  DNA ligase (ATP or NAD+)
     110775314
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110775314
DNA replication proteins [BR:soe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    110775314
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     110775314
DNA repair and recombination proteins [BR:soe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110775314
   NER (nucleotide excision repair)
    Other NER factors
     110775314
   MMR (mismatch excision repair)
    Other MMR factors
     110775314
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 ORC6
Other DBs
NCBI-GeneID: 110775314
NCBI-ProteinID: XP_021835616
UniProt: A0A9R0JHM9
Position
2:complement(105333227..105347305)
AA seq 847 aa
MLIALRHSSRHFPPTSPPKFVRLCGGMFTISSSSFSCFLNLLSLNATARFSSSFSLLPYN
SHFPANLKLRAMSSLPSAFDKLMSGARQNATAKKKSQTPSKSNANSSSSPRKRKTLNPSP
PISENPKPTSISVEKPLEADSGVESDTQKSELKSHVTKKAKEDPNPASVSVEKPLKSDSG
IELDTKKSELKNPFAKKSKVDVNVDKFVANLKEKPASFKPNSAAWWEDGDKVPFLFLARA
FDLIKGESGRIVITNITCNVLRTVMATTPDDLLEVVYLLANKIAPAHQGLELGLGDASLI
KALAESCGASEAVVKTSYRDLGDLGDVAKVLRSKQSMMFQPPPLTIAKVFNTFQLIAQAS
GKDSQERKKNYIMSLIVAAKDCEPVYLMRLLQAKLRISLAEKTLLTALGQAAVYSEEQSK
PPSDIQLEEAGKIVKEVYSVVPVYDKIVPALLHDGVWNLSKTCNFTPGVPIGPMLAKPAT
GVSEIIDKFQDMVFTCEYKYDGERAQIHFMEDGSVEIYSRNAERNTGKFPDVVAALSRFK
KPSVNSFILDCEIVAYDREKQKILPFQILSTRARKNVKESDIKVDVCVFAFDILYLNGKP
LLQEQLNVRRKHLYDSFEEDSGYFQFATILTSNDLEEIQKFLDAAINASCEGLIIKTLEK
EATYEPSKRSNNWLKLKKDYMDSFGDSLDLVPIGAFNGHGKRKGVYGAFLLACYDSNNEE
FQSICKIGTGFSDAVLEERSSSLRTKVISDPKPYFRYGNTLKPDCWFEPSEVWEVKAADL
TISPVHRAAVGEVDSNKGISLRFPRLVRLREDKAPEDATSSVQVAEMYRAQANNPHKKKQ
DDLEDDD
NT seq 2544 nt   +upstreamnt  +downstreamnt
atgctcatagctctacgccatagttcccgccattttcccccaacttcaccaccaaaattt
gtgcgactctgtggtggcatgttcaccatttcttcttcctctttctcttgcttcctcaat
cttctgtcactcaacgccactgccagattctcctcttctttctctctcctcccatacaat
tcccatttccctgcaaatttaaagcttcgagccatgtcttctctaccttccgcttttgac
aaactaatgtccggcgctcgtcaaaatgccactgccaagaagaaatcccaaacccccagc
aaaagcaacgccaattcttcgtcttcaccaagaaaacgaaaaaccttaaacccatctccc
ccaatttcggaaaaccctaaacccacctcgatttctgtcgagaaacccttagaagctgat
tcgggtgtagaatcagatacccagaagagtgaattgaaaagccatgttaccaagaaagct
aaggaagatcctaaccccgcttcggtttctgtggagaaacccttaaaatctgattcgggg
atagaattagataccaaaaagagtgaattgaaaaacccttttgctaagaaatctaaggtg
gatgttaatgtggataaatttgttgccaatttgaaggaaaaaccggcaagttttaaacct
aattcggcggcgtggtgggaggatggtgataaggttccatttctctttcttgccagggcg
tttgatttgattaaaggagaatcgggtaggattgtgattactaatattacttgtaatgtg
ctgaggactgtgatggcgacgactcctgatgatcttttggaggttgtttatttgttggcc
aacaagattgcacctgcccatcaagggttggaactcggacttggtgatgcttcgcttatt
aaggcgcttgccgagtcgtgtggagcctctgaagcagttgttaagacttcatatcgggat
ttaggtgatcttggtgatgtcgccaaagtactccgttctaagcaaagtatgatgtttcaa
cctccaccgctgactattgctaaagttttcaatacattccaactcattgctcaggcatct
ggaaaggatagtcaagaaaggaaaaaaaattacatcatgtcacttattgtggctgccaaa
gattgtgaacctgtatatttgatgcggctacttcaggcaaaattgcggattagtttggca
gagaaaactctccttactgctctgggacaagctgctgtgtattctgaagagcagtcaaag
cccccttctgatattcaactagaggaggctggaaagattgtcaaagaagtatattctgtg
gttcccgtttatgataaaatagtccctgcccttctccatgatggtgtgtggaatctgtcg
aagacctgtaactttacaccaggtgttcctatagggcctatgttagcaaaaccagcaact
ggagtttcagaaattatagataagtttcaagatatggtgtttacctgcgagtacaagtac
gatggagaacgtgctcaaatccatttcatggaagatggttctgttgagatatacagccga
aatgctgaaaggaacacggggaagttccctgatgtcgttgctgcactttctaggttcaag
aagccatctgtaaattctttcattttagattgtgaaattgttgcttatgatcgtgagaag
cagaagattcttccttttcagatacttagcacccgagctcgcaaaaatgtcaaagagagt
gacataaaggttgatgtttgtgtctttgctttcgacatattgtatctgaatggaaagcca
cttcttcaggaacagcttaatgttcgtaggaagcatctttacgattcatttgaagaagat
tctgggtattttcagtttgctacaatactcacgtctaatgatcttgaagaaatacagaag
tttcttgatgcggctatcaatgctagttgtgaaggattgattatcaaaacgttagaaaaa
gaggctacctacgagccttcaaagcgatctaataactggcttaaattgaaaaaggattac
atggacagctttggggactctctggatctggtgccaattggagcattcaatggtcatggg
aaacgaaaaggtgtatatggtgcttttctccttgcttgttatgacagtaacaatgaagag
ttccagagcatatgtaaaatcggtactggtttttctgatgcagtgcttgaagaacgttct
tccagtcttcgaactaaagtgatttcagatccaaagccatactttcgatatggaaatacc
ctaaaaccagattgctggtttgagccctctgaggtttgggaggtcaaagcagctgattta
actattagtcctgttcaccgtgctgcagttggtgaagtagattctaacaagggaatttca
ctccggtttccgcgtttggttcgtcttagagaagataaagctccagaggacgcaacatca
tctgttcaggttgcagaaatgtacagagctcaagcaaacaatccacacaaaaaaaagcaa
gatgatctggaagatgacgactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (43)   

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