KEGG   Spinacia oleracea (spinach): 110786248
Entry
110786248         CDS       T05137                                 
Name
(RefSeq) uncharacterized protein LOC110786248
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110786248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:soe03019]
    110786248
   03400 DNA repair and recombination proteins [BR:soe03400]
    110786248
Enzymes [BR:soe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     110786248
Messenger RNA biogenesis [BR:soe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     110786248
DNA repair and recombination proteins [BR:soe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      110786248
SSDB
Motif
Pfam: DEAD Helicase_C RQC HTH_40 RecQ_Zn_bind HRDC ResIII zf-LITAF-like
Other DBs
NCBI-GeneID: 110786248
NCBI-ProteinID: XP_021846471
UniProt: A0A9R0IBZ6
Position
4:159489840..159510511
AA seq 894 aa
MKPSISQMDVALKKFFGFSSFRPYQKEVIEKIMEGRDCLVVMATGSGKSLCYQVPPLIAG
NTGIVVSPLISLMQDQVMALKQRGIQAEYLASTQTDKTVQTKAESGFYSLLFMTPEKACT
IPNSFWKKLLKAGICLFAVDEGHCISEWGHDFRMEYKQLDKLRPILSDVPFVSLTATATD
KVRLDIIKSLKMKDPYVAIGSFDRKNIFYGVKSFNRGYPFLDELVQEVSKSVASSGSTII
YCLTIKDVEQIHHLLESAGIKTGMYHGQMGSGAREEAHRLFIRDELNVMVATIAFGMGID
KPNIRQVIHYGCSKSLETYYQESGRCGRDGIASICWLYYTRSDFTKSDFYCSGLHTENQR
KAVVDSLMKAQKYCLLTTCRRKFLLEHFGEKVPAENCGNCDNCTTTRTERDMSKEAYLLM
ACIHSCRGNWGLNLPIDVLRGSRSKRIVDAQFDRLPLHGLGKAYSSNWWKSLGSQLISHD
YLKETISDVYRFVSVSTKGVQYLNSAGPDCQPPLFLPIIEEMNEEEEGLPGQVEGLKTLT
SSECEGLAEAEVQLYHTLLEERAKVARATGTAPYAICGEATIKKFALVRPSTRARLANID
GVNQHFVTTHGDHFLQAIRNVAQDLNMSLDGEIIIQNVSVKKVTPVQAYPKKLTPAKFEA
WRMWHEDGHSIEKIANFPGRSAPIKEGTVLSYLLEAFQEGLATDWLRFCAEIELTPDMFT
SILNAVTKVGSTEKLKPIKDELPENVNYSHIKAGLTMLSCGISSPSELNHPEKMNEVPEA
AVSSPNSLASCVAEDSCNSDSKLPKKGEDEESDYDGDMLRSKRCKVEIGNDSRSIMEATQ
SSIVEWLKNYDNGVALQDIIQHFRDSSEESIHTLLVDLEGDFVVYQKNGVYKMF
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgaaaccctcaatttctcaaatggatgtcgccctcaaaaaattttttgggttttctagt
tttcggccgtatcaaaaggaagtgattgagaaaattatggagggaagagattgtttggtt
gttatggcaactggtagtggcaagtccctttgctatcaagttcctcctttgattgctggg
aatacaggcattgtggtcagtcctctgatatctttgatgcaagatcaggtaatggcttta
aaacaacgtggcatccaagcggagtacctagcctctactcaaactgataaaactgtgcag
accaaagccgagtctggcttttatagtttgttgttcatgaccccagagaaagcatgcaca
attcctaacagcttttggaaaaaactgctcaaggccggaatttgtctttttgctgttgat
gaaggacattgcatatcagagtggggtcatgatttcaggatggagtataaacaactggac
aagttgcgtcccattctctcggatgttccatttgtgagcttgactgcaacggctacagac
aaggtccgattagacataattaagtcattgaagatgaaggatccttatgttgctataggc
tcatttgatcgtaaaaatatcttttatggcgtgaaatcttttaatcgaggctatccgttc
ctagacgagcttgtacaagaagtttcaaaatctgtggctagttctggatcaaccatcatt
tactgccttacaattaaagatgttgagcagatacatcatttgctggaaagcgcaggaatc
aagactggaatgtatcatggtcaaatgggtagtggagctcgggaagaggcacacagatta
tttattagagatgaattgaatgtcatggttgctactattgcatttggcatgggaattgat
aagccaaacataagacaagtgatacattatggttgctcgaagagtttggagacgtattac
caggagagcgggcgatgtgggagagatggtatagcatctatctgctggctctattacacg
agaagtgacttcacaaaatctgacttttattgcagtggattgcatacagaaaatcaacga
aaagctgttgtcgattcactgatgaaagcacaaaagtattgcttgctgacaacgtgcaga
aggaagttcttacttgaacactttggtgaaaaagttccagcagaaaattgtggaaattgt
gacaattgcactactacccggacggagcgagacatgtctaaagaagcttatcttctaatg
gcttgtattcattcatgtaggggtaattggggtctcaatttgcctatagatgttcttcgg
ggatctcggtcaaaaagaatagttgatgctcagtttgacaggcttccactgcatggcctt
gggaaggcttactcttcaaattggtggaagtcactaggttcccaattgatttctcatgat
tacctgaaagagacaattagtgacgtttacagatttgtgagtgtcagcaccaaaggagtg
caatacctaaattctgcaggacctgattgtcaaccacctttattcctgcctataatcgag
gaaatgaatgaggaagaagaaggtttaccaggtcaagttgaaggcttgaaaactttgaca
tcctccgaatgtgaaggattagcagaggctgaggttcaactttatcacacacttttagaa
gagagggcaaaggttgcgagagccactggaactgctccatatgcaatctgtggtgaggct
accattaaaaaatttgcattagttagaccatctacaagagcaagattagcaaatattgat
ggtgtcaaccagcattttgtcacaacacatggggatcattttcttcaagctattcggaat
gttgcacaagatcttaatatgtctttggatggggagattataatacaaaatgtttcagtg
aaaaaggtgactccagttcaagcctatccgaaaaagcttacaccagcgaagtttgaagca
tggagaatgtggcatgaagatggacactcgattgagaaaatcgctaatttccctggtaga
tctgccccaattaaagaaggaactgtcctcagctatctcctggaggcttttcaagaaggt
ttagcaactgattggctcagattttgtgctgagattgaactaacacctgatatgttcacg
agtatcttaaatgcagtaacaaaggttggctccaccgaaaagttgaagcctattaaagac
gaattacctgaaaatgtaaattattcacatataaaggcaggtcttacaatgctaagctgt
ggtatctcttctccatctgaactcaatcatccagagaaaatgaacgaagttcctgaagca
gctgtatcatcaccaaactctttggcttcatgtgttgctgaagattcttgtaactcagat
agtaaattgccaaagaagggagaggatgaagaaagtgattatgacggcgatatgcttaga
tcgaagcgttgcaaagttgaaataggaaatgatagtcgcagtataatggaagccactcag
agttctatagtagaatggcttaaaaactatgataatggggttgctttgcaagatatcata
caacacttcagagattcaagtgaagaatcaatacacactttgcttgttgaccttgaaggt
gactttgtggtataccaaaagaatggtgtatataagatgttctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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