KEGG   Spinacia oleracea (spinach): 110790008
Entry
110790008         CDS       T05137                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03082  ATP-dependent chromatin remodeling
soe03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110790008
   03083 Polycomb repressive complex
    110790008
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:soe03036]
    110790008
Enzymes [BR:soe01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110790008
Chromosome and associated proteins [BR:soe03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110790008
   HDAC complexes
    Sin3A-HDAC complex
     110790008
    BRAF-HDAC complex
     110790008
    REST complex
     110790008
    SHIP complex
     110790008
    MiDAC complex
     110790008
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110790008
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110790008
  Chromatin remodeling factors
   NuRD complex
    110790008
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 110790008
NCBI-ProteinID: XP_021850427
UniProt: A0A9R0IJW8
Position
1:complement(87188769..87199648)
AA seq 429 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVDFLHRITPDKQHHFMSEMAKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDVKENGEREGKNYAINVPLKNGIDDASYTRLFKA
IISKVVEFYQPGVIVLQCGADSLSGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTDLPNEIPENEYIKYFGPDYSLRIPNGLIENMNSKSYLTTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDGDENPDERINQHTQDKLIQRDDEYYEGDH
DNDHHMDDV
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgctctaaggacaaaatatcttacttctacgacggtgatgttggtagtgtatatttt
ggcccgaatcatccaatgaagcctcacaggctgtgtatgacccaccatctcgtcctctcc
tacgaccttcacaagaagatggaaatctataggcctcacaaagcgtacccggtagagcta
gctcagtttcattcagctgattacgtcgatttcttacatcgaattacacccgataagcag
catcacttcatgtctgaaatggccaaatataatcttggagaagattgtccagtttttgac
aatttgttcgaattttgccaaatttatgctggtggaacgattgatgctgcccgtaggttg
aacaataaactttgtgacattgctataaattgggcgggtggattgcatcatgcgaagaaa
tgtgaggcttctggattttgttacatcaatgacttggttttggggatattggagcttttg
aagtatcatgctcgtgttctgtacattgatattgatgtacatcatggcgatggtgttgaa
gaggcattctatttcactgatagagtgatgactgtcagtttccataaatatggagatctc
ttctttcctggaacaggagatgtcaaggaaaatggagagagggaagggaaaaactatgcc
ataaatgttcctctaaaaaatggtattgatgacgctagctatacgagactgttcaaggcg
attatttccaaggtcgtcgagttttatcagcctggagtaattgttctgcaatgcggagct
gattcactttctggtgaccgattaggctgcttcaacctttctattgatgggcatgcagag
tgcgttaggtttgtgaagaaatttaatcttcccttgctggttactggaggaggtggctac
acaaaagagaatgttgctcgatgctggactgttgaaacaggagttcttttagatacagat
ctaccaaatgagattccagagaacgagtatatcaaatacttcggaccagattattccttg
aggattccaaatggactaatagagaacatgaacagtaaatcatacttgacaacaatcaag
atgcaagttctggaaaatctccggtgtatccaacatgcaccaagtgtacagatgcaggag
gtcccccctgatttttatatccctgactttgatggagatgagaatcctgatgaacgcatt
aatcagcacacacaggataagctaatccagagagatgatgagtattacgagggtgaccat
gacaatgatcaccacatggacgatgtatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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