KEGG   Spinacia oleracea (spinach): 110799010
Entry
110799010         CDS       T05137                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
soe  Spinacia oleracea (spinach)
Pathway
soe03420  Nucleotide excision repair
soe04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:soe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    110799010
  09124 Replication and repair
   03420 Nucleotide excision repair
    110799010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:soe04121]
    110799010
   03400 DNA repair and recombination proteins [BR:soe03400]
    110799010
Ubiquitin system [BR:soe04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     110799010
DNA repair and recombination proteins [BR:soe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      110799010
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      110799010
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 110799010
NCBI-ProteinID: XP_021859906
UniProt: A0A9R0J2R5
Position
5:51681642..51700590
AA seq 1089 aa
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIVAKCTRIEIHMLTPQGLQPMLDVPIYG
RIATLELFRPHGETQDFLFIATERYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSRPTIVVL
YQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPFCGVIIVGEETIVYC
SATAFKAIPIRPSITRAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVFIGSSYGDSQLIKLNLQPDVKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDVYDTFLVVS
FISETRILAMNLEDELEETEIEGFDSQVQTLFCHDALYNQLVQVTSSSVRLVSSTSRELR
NEWKAPTGYSVNVATANASQVLLATGGGHLVYLEIGDGILTEVKHAQLEYEISCLDINPI
GPNPNFSQLAAVGMWTDISVRIFSLPDLNLIIKENLGGEIIPRSVLLCSFEGISYLLCAL
GDGHLLNFILNMSTGELTDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQTRTFAICSLKYNQASAEESEMHFVRLLDDQTFEIISTYALDTYECGCSILSCSFSDD
INVYYCVGTAYVLPEENEPTKGRILVFVVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMLRDDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDVYLGAENNFNLFTVRKNSEGATDEERARLEVVGEYHL
GEFINRFRHGSLVMRLPDSDIGQIPTVIFGTVNGVIGVIASLPNDQYIFLEKLQSNMRKV
IKGVGGLNHEHWRSFHNEKKTADARNFLDGDLIESFLDLSRGRMEEISKTMGTSIEELSK
RVEELTRLH
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgagcatatggaactacgtcgtcacggctcacaagcctacgaatgtcacacattcctgt
gtcggcaatttcaccagtcctcaagagctcaatcttattgtcgctaaatgcacaagaatt
gagattcacatgttaactcctcaaggtcttcagcccatgctggacgttccaatatatgga
agaattgcaacacttgaactttttcgaccgcatggtgaaacacaagatttcttattcatt
gcaacagaaagatacaaattttgtgttctccaatgggatcctgagacatccgagctcgtg
accagagcaatgggagatgtttcggatcgcatcggtcgtccaactgacaatggtcagatt
ggcatcattgatcctgactgcagattaattgggctccatttatacgatgggttattcaag
gttatcccatttgataacaaaggacagctgaaagaagcttttaatatcaggcttgaggag
cttcaagtgcttgacataaagtttctatatggctgttctagacctacaattgtagttcta
taccaggataataaagacgctcgtcatgtaaaaacatacgaggtttcattgaaggacaaa
gattttgtcgaggggccatggtcccagaacaatcttgataatggggcggatttgcttatt
ccagttccaccaccattttgtggggttatcattgtgggggaggagacaattgtatactgc
agtgccacagcatttaaagcaatccccatcagaccttccattacaagagcctatggaagg
gtggatgctgatggttcccggtatttgctcggtgatcatgcaggacttttgcatctgctt
gttatcactcatgagaaagagaaagttactggcctgaaaatagagcttttgggggagaca
tctattgcatcaacaatatcgtacctggataatgcatttgtttttattggctcaagctat
ggagattcacagctcataaaactaaatttacaaccagatgttaaaggatcgtatgtagaa
gtcttggaaagatatgtcaatttgggtccaattgtagacttctgtgtggttgaccttgag
aggcaagggcaaggccaggttgtaacttgttctggagcatacaaggatggttctcttcgt
attgttcgtaatgggattgggataaatgaacaggcatcagtggagctgcaaggcatcaag
ggaatgtggtccttgaggtcatcgacggatgatgtatatgatactttcttggtcgttagt
ttcatcagcgagaccagaattctagctatgaatcttgaggatgaattggaagaaactgaa
attgaagggtttgactcacaagtgcagactttattttgccatgatgctttgtacaaccaa
ctcgtgcaagtcacctcaagctcagtcagactggtcagttcgacatcaagagaacttcga
aatgagtggaaagccccaacaggatattctgtaaatgttgctactgctaatgcatcccag
gttcttcttgccactggtggtgggcatcttgtttatttggaaattggtgatggaattttg
acggaagtgaaacatgcacagttggagtatgagatatcatgtcttgacataaatcccatt
ggtccaaatccaaattttagtcagctagctgctgttggaatgtggacagatataagcgtt
aggatattttcgcttccagatcttaatctaatcatcaaagagaatctcgggggagaaata
attcctcgctctgttcttctatgctcttttgaaggaatatcgtatttattgtgcgctctt
ggagatggccatctcttgaactttatattgaacatgagtactggtgaactgactgaccgg
aagaaggtgtctctgggtacacaacctattacactcaggacattctcatctaagaatgct
actcatgtatttgccgcctctgatcggccaactgttatatacagcagcaacaaaaagttg
ctttacagtaatgtaaatctcaaggaagttagtcatatgtgccctttcaattcagcagct
tttcctgacagccttgcgatcgcaaaagaaggtgaactcacaataggcaccattgatgat
attcagaagcttcatattcgatctattcctctgggagaacatgctcggcgtatctgccac
caggaacaaactcgcacttttgccatttgtagtttgaagtacaaccaagctagtgcggag
gaatctgaaatgcattttgtacgcttgttggatgaccaaacctttgagatcatatctact
tatgcacttgatacctatgaatgtggttgctccatactgagttgctcattctcagatgac
atcaatgtttactactgtgttggaacagcatatgttttacctgaggaaaatgagccaacc
aagggaagaattctggtttttgttgttgaagacggaaagctgcaactcattgctgagaag
gaaactaaaggtgcagtgtactcacttaatgccttcaacggcaagctgcttgctgccatc
aatcagaaaattcagctttataagtggatgcttcgggatgatggaactcacgagttacag
tctgaatgtggacaccatgggcacattcttgccttgtatgtccagactcgtggtgatttc
attgttgttggggatctgatgaaatcaatttctttactaatatacaagcatgaagaaggt
gctattgaagagcgtgcacgggactacaatgctaattggatgtcagctgtagagattctt
gatgatgatgtgtatcttggtgcagaaaataatttcaatctatttactgtgaggaaaaat
agtgaaggtgcgacggatgaggagcgtgcacggcttgaagttgttggggaataccacctt
ggagaattcatcaaccgttttcgtcatggttctctggttatgaggttgccagattcagac
attggtcaaataccaactgtgatatttggaactgttaatggtgtaataggggtaattgcc
tcccttccgaatgaccagtacatcttccttgagaagctgcagtcaaacatgaggaaggtt
ataaagggtgtaggaggactgaatcatgagcattggcggtcctttcacaatgagaagaag
acagcagatgcgagaaacttccttgatggagatcttattgaatctttccttgatctcagt
cgcggtcgtatggaagagatttctaaaacaatgggtacttcaatagaggaacttagcaag
agagttgaggagttgaccagattgcactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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