KEGG   Shewanella oneidensis: SO_0021Help
Entry
SO_0021           CDS       T00099                                 

Gene name
fadB
Definition
aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB (EC:4.2.1.17 5.3.3.8 1.1.1.35 5.1.2.3)
Orthology
K01825  
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
Organism
son  Shewanella oneidensis
Pathway
Fatty acid degradation
Valine, leucine and isoleucine degradation
Geraniol degradation
Lysine degradation
Tryptophan metabolism
beta-Alanine metabolism
Propanoate metabolism
Butanoate metabolism
Limonene and pinene degradation
Caprolactam degradation
Biosynthesis of unsaturated fatty acids
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism
Fatty acid metabolism
Module
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:son00001]
 Metabolism
  Overview
   01200 Carbon metabolism
    SO_0021 (fadB)
   01212 Fatty acid metabolism
    SO_0021 (fadB)
  Carbohydrate metabolism
   00640 Propanoate metabolism
    SO_0021 (fadB)
   00650 Butanoate metabolism
    SO_0021 (fadB)
  Lipid metabolism
   00071 Fatty acid degradation
    SO_0021 (fadB)
   01040 Biosynthesis of unsaturated fatty acids
    SO_0021 (fadB)
  Amino acid metabolism
   00280 Valine, leucine and isoleucine degradation
    SO_0021 (fadB)
   00310 Lysine degradation
    SO_0021 (fadB)
   00380 Tryptophan metabolism
    SO_0021 (fadB)
  Metabolism of other amino acids
   00410 beta-Alanine metabolism
    SO_0021 (fadB)
  Metabolism of terpenoids and polyketides
   00903 Limonene and pinene degradation
    SO_0021 (fadB)
   00281 Geraniol degradation
    SO_0021 (fadB)
  Xenobiotics biodegradation and metabolism
   00930 Caprolactam degradation
    SO_0021 (fadB)
Enzymes [BR:son01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.35  3-hydroxyacyl-CoA dehydrogenase
     SO_0021 (fadB)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.17  enoyl-CoA hydratase
     SO_0021 (fadB)
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.2  Acting on hydroxy acids and derivatives
    5.1.2.3  3-hydroxybutyryl-CoA epimerase
     SO_0021 (fadB)
  5.3  Intramolecular oxidoreductases
   5.3.3  Transposing C=C bonds
    5.3.3.8  dodecenoyl-CoA isomerase
     SO_0021 (fadB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(24493..26643)
Genome map
AA seq 716 aa AA seqDB search
MIYQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSG
KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCET
ILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNEQRAEDALK
VGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQRKLSPLTLPKLEAMMSFTTAKGMV
FSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVAKALIGIFLNDQFVK
GKAKKAGKLAKAVNSAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLNEAAKLL
SAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVVEHPKVKAQVLAEVEQYVSE
DAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAY
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRLGQKNGKGFYAYSVDSRGKP
KKDVDPTSYELLKAAFGEQKAFDADEIIARTMIPMIIETVRCLEEGIVASPAEADMGLVY
GLGFPPFRGGVFRYLDTMGVANFVALADKYAHLGGLYQVTDAMRALAANNGSYYQA
NT seq 2151 nt NT seq  +upstreamnt  +downstreamnt
atgatctaccaaagtcctacaattcaggttgagttactcgaggataatattgccaagctg
tgctttaacgcacccggttcggtgaacaaattcgatagagaaacactcgcctcactcgat
gccgcattagacagcatcaaacaacaatcaaacattcaggcattagtgctcacatcaggt
aaagatacctttatcgtcggcgctgacattactgaatttttaggcttattcgcacaagat
gatgcagtactgctctcttgggttgaacaggccaacgccgtattcaataaactcgaagat
ttacctttcccaactgcttcagccattaaaggttttgccttaggcggcggttgtgaaacc
attttagcgacagatttccgtattgctgacaccacggcaaaaatcggcttacctgaaacc
aaactgggtattatcccaggctttggcggtactgtacgtctaccacgcgtgattggtgct
gacaacgctctcgagtggatcaccacaggcaatgagcagcgcgctgaagatgcattaaaa
gtcggtgccgttgacgccgttgttgcaccagaagccttagaagttgcggcgattcaaatg
ctcaaagatgctgtcgcagaaaagcttgattggcaagcgcgtcgccaacgcaaattatcg
ccactgacactgcctaaactcgaagccatgatgtctttcactacggctaaaggcatggtt
ttctctgtcgcaggcaaacattacccagcaccaatggcagcggtaaacgtagttgagcaa
gcagcaaccaaaggccgcagcgacgcattacaaattgagcatcaggctttcatcaagtta
gctaagactgatgtggccaaggcgcttatcggtatcttccttaatgatcaattcgttaaa
ggcaaagccaagaaagctggcaagctggccaaagcagtaaatagcgccgccgtattaggt
gcaggcatcatgggcggcggcatcgcttaccaaagcgccagcaaaggcacgccgatcgtg
atgaaagatattgcccagccagcattagatttaggtctcaatgaagcggcaaaactgcta
tcagcgcaagttgcccgtggccgctctacccctgaaaaaatggcaaaggtactgaacaac
atcaccccagctctagaatatgcaccagtgaaacatgccgacgtggttgttgaagccgtg
gttgagcatccaaaagtgaaagcacaggtactggcagaggttgaacaatacgtcagtgaa
gatgcgattatcgcttctaacacttcaacgatttcaatcagcttactcgctaagagcatg
aagaagccagagcgtttctgcggtatgcacttcttcaaccctgtgcacaaaatgccattg
gttgaagttatccgtggcgagcacagctcagaagaaaccatcgcatcagttgtcgcttac
gccagcaaaatgggtaaaaccccaatcgttgttaacgattgcccaggcttcttcgttaac
cgcgtcctcttcccttactttgccggctttaatggtctactcgccgaaggtggcgacttt
gctgctatcgataaagtgatggaaaaacaattcggctggccaatgggccccgcttatctg
ctagacgttgtcggcctagatacaggtcaccacgcgcaagcagtaatggccgaaggcttc
cctgatcgtatgggcaaatctggcaatgacgcgattgacgtgatgtttgagaacaaacgt
ctcggccaaaagaacggtaagggtttctacgcttactcagtggatagccgcggcaagcca
aagaaagatgtcgacccaaccagctatgagctgctgaaggccgcttttggtgagcaaaaa
gcattcgatgcggatgaaatcatcgcccgcactatgatcccaatgattatcgaaaccgtt
cgctgtttagaagaaggcattgtggcatcacctgccgaagcggatatgggcttagtctac
ggtttaggcttcccgccattccgtggtggtgtgttccgttacttagacaccatgggcgtt
gccaactttgtggctttagcagacaaatacgcgcatttaggtggtttgtatcaagtcacc
gacgccatgcgtgcccttgcagccaacaacggtagctactaccaagcctaa

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