KEGG   Shewanella oneidensis: SO_2855
Entry
SO_2855           CDS       T00099                                 
Name
(GenBank) exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
son  Shewanella oneidensis
Pathway
son03030  DNA replication
son03430  Mismatch repair
son03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:son00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SO_2855
   03430 Mismatch repair
    SO_2855
   03440 Homologous recombination
    SO_2855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:son03032]
    SO_2855
   03400 DNA repair and recombination proteins [BR:son03400]
    SO_2855
Enzymes [BR:son01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SO_2855
DNA replication proteins [BR:son03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SO_2855
DNA repair and recombination proteins [BR:son03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SO_2855
SSDB
Motif
Pfam: RNase_T CAF1 DNA_pol_A_exo1 DEDDh_C
Other DBs
NCBI-ProteinID: AAN55871
UniProt: Q8EDA7
Position
complement(2978858..2979535)
AA seq 225 aa
MGAWLIHAKLQWRTLRCQHQLFKDYYQSLIPLIELPINQAPLIAMDLEMTGLDPFKDQIL
SIGLVPIENGAIPLSHAQQKLVQIRGSVGQSAIIHGILDNHLTQAVSIEEAMAWFMEQTR
GRVLVAHHSPLDCRFLQQDILTIYHQAVLLPAIDTLVLEKQRLLREHSVLKEGSLRLGAC
RERYGLPIYGAHSALTDALACAELLLAQVAAMGGGADISVGDLLT
NT seq 678 nt   +upstreamnt  +downstreamnt
atgggagcttggttgattcacgccaagctgcaatggcgaacgctgcgttgtcagcatcaa
ttatttaaagattactaccagtctttaattccgctcattgagctgcctatcaatcaggca
cctttgatagcgatggatttggagatgactgggttagatccttttaaggatcaaatctta
agcattggcttagtccctattgaaaatggcgctattccattaagtcatgctcagcaaaag
ttagtgcaaattcggggcagtgttggtcaaagtgccatcattcatgggatcctcgacaac
catttaactcaggctgtcagtattgaggaggctatggcatggtttatggagcaaacccgt
ggccgtgtgttggtggcacatcactccccactcgattgtcgttttttacaacaagatata
ttgactatttaccatcaagcggttttgctccccgccatagataccttagtgcttgagaaa
cagcggttattacgcgagcattcagttcttaaagaagggagtttacggcttggggcttgt
cgtgagcgttatggcttaccgatttacggtgcccatagtgcattaaccgatgcattagcc
tgcgctgagctattattagcgcaagttgctgccatgggcggtggcgcagatatttccgtc
ggggatttacttacctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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