ID   RPOD_LISIN              Reviewed;         374 AA.
AC   Q92BQ6;
DT   23-JAN-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-2001, sequence version 1.
DT   01-MAY-2013, entry version 81.
DE   RecName: Full=RNA polymerase sigma factor RpoD;
DE   AltName: Full=Sigma-43;
GN   Name=rpoD; OrderedLocusNames=lin1491;
OS   Listeria innocua serovar 6a (strain CLIP 11262).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
OX   NCBI_TaxID=272626;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CLIP 11262;
RX   PubMed=11679669; DOI=10.1126/science.1063447;
RA   Glaser P., Frangeul L., Buchrieser C., Rusniok C., Amend A.,
RA   Baquero F., Berche P., Bloecker H., Brandt P., Chakraborty T.,
RA   Charbit A., Chetouani F., Couve E., de Daruvar A., Dehoux P.,
RA   Domann E., Dominguez-Bernal G., Duchaud E., Durant L., Dussurget O.,
RA   Entian K.-D., Fsihi H., Garcia-del Portillo F., Garrido P.,
RA   Gautier L., Goebel W., Gomez-Lopez N., Hain T., Hauf J., Jackson D.,
RA   Jones L.-M., Kaerst U., Kreft J., Kuhn M., Kunst F., Kurapkat G.,
RA   Madueno E., Maitournam A., Mata Vicente J., Ng E., Nedjari H.,
RA   Nordsiek G., Novella S., de Pablos B., Perez-Diaz J.-C., Purcell R.,
RA   Remmel B., Rose M., Schlueter T., Simoes N., Tierrez A.,
RA   Vazquez-Boland J.-A., Voss H., Wehland J., Cossart P.;
RT   "Comparative genomics of Listeria species.";
RL   Science 294:849-852(2001).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. This is the primary sigma factor of this bacterium.
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
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DR   EMBL; AL596168; CAC96722.1; -; Genomic_DNA.
DR   PIR; AB1619; AB1619.
DR   RefSeq; NP_470827.1; NC_003212.1.
DR   ProteinModelPortal; Q92BQ6; -.
DR   SMR; Q92BQ6; 103-374.
DR   STRING; 272626.lin1491; -.
DR   EnsemblBacteria; CAC96722; CAC96722; CAC96722.
DR   GeneID; 1130099; -.
DR   KEGG; lin:lin1491; -.
DR   PATRIC; 20299715; VBILisInn102668_1524.
DR   GenoList; LIN1491; -.
DR   eggNOG; COG0568; -.
DR   HOGENOM; HOG000270273; -.
DR   KO; K03086; -.
DR   OMA; AERMSSF; -.
DR   ProtClustDB; PRK09210; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.10; -; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR012760; RNA_pol_sigma_RpoD_C.
DR   InterPro; IPR011991; WHTH_DNA-bd_dom.
DR   Pfam; PF03979; Sigma70_r1_1; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma_r2; 1.
DR   SUPFAM; SSF88659; Sigma_r3_r4; 2.
DR   TIGRFAMs; TIGR02393; RpoD_Cterm; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; Sigma factor; Transcription;
KW   Transcription regulation.
FT   CHAIN         1    374       RNA polymerase sigma factor RpoD.
FT                                /FTId=PRO_0000093896.
FT   DNA_BIND    335    354       H-T-H motif (By similarity).
FT   MOTIF       165    178       Polymerase core binding (Potential).
SQ   SEQUENCE   374 AA;  42446 MW;  1591D2A6BF91A2C3 CRC64;
     MSDKTQNTKP VAELNVEQVK EALIEEGKKK GILTYAKIAA RLAPFTLDSD QMDEYLEHVG
     EAGIEVSDDA DDEDPDETEL VKEETESFDL TDMSVPPGVK INDPVRMYLK EIGRVDLLTA
     DEEIALAKRI EAGDIEAKGR LAEANLRLVV SIAKRYVGRG MLFLDLIQEG NMGLMKAVEK
     FDFNKGFKFS TYATWWIRQA ITRAIADQAR TIRIPVHMVE TINKLIRVQR SLLQDLGRDP
     SPEEIGEEMD LPTEKVREIL KIAQEPVSLE TPIGEEDDSH LGDFIEDQDA TSPSDHAAYE
     LLKEQLEDVL DTLTDREENV LRLRFGLDDG RTRTLEEVGR VFGVTRERIR QIEAKALRKL
     RHPSRSKQLK DFLE
//