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Database: UniProt/SWISS-PROT
Entry: SODM_ORYSJ
LinkDB: SODM_ORYSJ
Original site: SODM_ORYSJ 
ID   SODM_ORYSJ              Reviewed;         231 AA.
AC   Q43008; A0A0P0WKM7; Q0DJ64; Q43121; Q7GCN0;
DT   26-SEP-2001, integrated into UniProtKB/Swiss-Prot.
DT   27-JUN-2006, sequence version 2.
DT   28-MAR-2018, entry version 124.
DE   RecName: Full=Superoxide dismutase [Mn], mitochondrial;
DE            EC=1.15.1.1;
DE   Flags: Precursor;
GN   Name=SODA; Synonyms=RMSOD1, SODAOS1;
GN   OrderedLocusNames=Os05g0323900, LOC_Os05g25850;
GN   ORFNames=OsJ_18067, P0018A03;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=8290649; DOI=10.1104/pp.103.4.1477;
RA   Sakamoto A., Nosaka Y., Tanaka K.;
RT   "Cloning and sequencing analysis of a complementary DNA for manganese-
RT   superoxide dismutase from rice (Oryza sativa L.).";
RL   Plant Physiol. 103:1477-1478(1993).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RA   Kaminaka H., Yokoi H., Nosaka Y., Sakamoto A., Morita S., Masumura T.,
RA   Tanaka K.;
RT   "Cloning and characterization of manganese-superoxide dismutase gene
RT   from rice.";
RL   (er) Plant Gene Register PGR99-170(1999).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   TISSUE=Etiolated shoot;
RA   Pan S.M., Chen J.C.;
RT   "Rice manganese superoxide dismutase are encoded by multigene
RT   family.";
RL   Submitted (DEC-1994) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   TISSUE=Seed;
RA   Yoon U.H., Kim Y.H.;
RT   "Structural and expression analysis of germinating seed genes in Oryza
RT   sativa L.";
RL   Submitted (AUG-2009) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA   Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA   Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S.,
RA   Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT   "A fine physical map of the rice chromosome 5.";
RL   Mol. Genet. Genomics 274:337-345(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [7]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [8]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
RA   McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
RA   Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
RA   Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
RA   Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using
RT   next generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [9]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [10]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: Destroys superoxide anion radicals which are normally
CC       produced within the cells and which are toxic to biological
CC       systems.
CC   -!- CATALYTIC ACTIVITY: 2 superoxide + 2 H(+) = O(2) + H(2)O(2).
CC   -!- COFACTOR:
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Evidence={ECO:0000250};
CC       Note=Binds 1 Mn(2+) ion per subunit. {ECO:0000250};
CC   -!- SUBUNIT: Homotetramer. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion matrix {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the iron/manganese superoxide dismutase
CC       family. {ECO:0000305}.
DR   EMBL; L19436; AAA62657.1; -; mRNA.
DR   EMBL; AB026725; BAA86897.1; -; Genomic_DNA.
DR   EMBL; L34038; AAA57130.1; -; mRNA.
DR   EMBL; GQ848046; ADM86859.1; -; mRNA.
DR   EMBL; AC134346; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AP008211; BAF17109.1; -; Genomic_DNA.
DR   EMBL; AP014961; BAS93374.1; -; Genomic_DNA.
DR   EMBL; CM000142; EEE63257.1; -; Genomic_DNA.
DR   EMBL; AK104030; BAG96380.1; -; mRNA.
DR   EMBL; AK104160; BAG96463.1; -; mRNA.
DR   PIR; T04072; T04072.
DR   PIR; T04312; T04312.
DR   RefSeq; XP_015640127.1; XM_015784641.1.
DR   UniGene; Os.10618; -.
DR   ProteinModelPortal; Q43008; -.
DR   SMR; Q43008; -.
DR   STRING; 39947.LOC_Os05g25850.1; -.
DR   PaxDb; Q43008; -.
DR   PRIDE; Q43008; -.
DR   EnsemblPlants; Os05t0323900-01; Os05t0323900-01; Os05g0323900.
DR   GeneID; 4338417; -.
DR   Gramene; Os05t0323900-01; Os05t0323900-01; Os05g0323900.
DR   KEGG; osa:4338417; -.
DR   eggNOG; KOG0876; Eukaryota.
DR   eggNOG; COG0605; LUCA.
DR   HOGENOM; HOG000013583; -.
DR   InParanoid; Q43008; -.
DR   KO; K04564; -.
DR   OMA; KWGSFDK; -.
DR   OrthoDB; EOG09360K54; -.
DR   Reactome; R-OSA-3299685; Detoxification of Reactive Oxygen Species.
DR   Proteomes; UP000059680; Chromosome 5.
DR   ExpressionAtlas; Q43008; baseline and differential.
DR   Genevisible; Q43008; OS.
DR   GO; GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0004784; F:superoxide dismutase activity; IEA:UniProtKB-EC.
DR   Gene3D; 1.10.287.990; -; 1.
DR   Gene3D; 2.40.500.20; -; 1.
DR   InterPro; IPR001189; Mn/Fe_SOD.
DR   InterPro; IPR019833; Mn/Fe_SOD_BS.
DR   InterPro; IPR019832; Mn/Fe_SOD_C.
DR   InterPro; IPR019831; Mn/Fe_SOD_N.
DR   InterPro; IPR036324; Mn/Fe_SOD_N_sf.
DR   InterPro; IPR036314; SOD_C_sf.
DR   Pfam; PF02777; Sod_Fe_C; 1.
DR   Pfam; PF00081; Sod_Fe_N; 1.
DR   PIRSF; PIRSF000349; SODismutase; 1.
DR   PRINTS; PR01703; MNSODISMTASE.
DR   SUPFAM; SSF46609; SSF46609; 1.
DR   SUPFAM; SSF54719; SSF54719; 1.
DR   PROSITE; PS00088; SOD_MN; 1.
PE   2: Evidence at transcript level;
KW   Complete proteome; Manganese; Metal-binding; Mitochondrion;
KW   Oxidoreductase; Reference proteome; Transit peptide.
FT   TRANSIT       1     27       Mitochondrion. {ECO:0000250}.
FT   CHAIN        28    231       Superoxide dismutase [Mn], mitochondrial.
FT                                /FTId=PRO_0000032900.
FT   METAL        55     55       Manganese. {ECO:0000250}.
FT   METAL       103    103       Manganese. {ECO:0000250}.
FT   METAL       192    192       Manganese. {ECO:0000250}.
FT   METAL       196    196       Manganese. {ECO:0000250}.
FT   CONFLICT    226    226       Y -> I (in Ref. 3; AAA57130).
FT                                {ECO:0000305}.
SQ   SEQUENCE   231 AA;  24997 MW;  0FCFD08FC26325C0 CRC64;
     MALRTLASRK TLAAAALPLA AAAAARGVTT VALPDLPYDY GALEPAISGE IMRLHHQKHH
     ATYVANYNKA LEQLDAAVAK GDAPAIVHLQ SAIKFNGGGH VNHSIFWNNL KPISEGGGDP
     PHAKLGWAID EDFGSFEALV KKMSAEGAAL QGSGWVWLAL DKEAKKLSVE TTANQDPLVT
     KGANLVPLLG IDVWEHAYYL QYKNVRPDYL SNIWKVMNWK YAGEVYENAT A
//
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