KEGG   Saprolegnia parasitica: SPRG_04625
Entry
SPRG_04625        CDS       T04137                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
spar  Saprolegnia parasitica
Pathway
spar03030  DNA replication
spar03410  Base excision repair
spar03420  Nucleotide excision repair
spar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPRG_04625
   03410 Base excision repair
    SPRG_04625
   03420 Nucleotide excision repair
    SPRG_04625
   03430 Mismatch repair
    SPRG_04625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spar03032]
    SPRG_04625
   03036 Chromosome and associated proteins [BR:spar03036]
    SPRG_04625
   03400 DNA repair and recombination proteins [BR:spar03400]
    SPRG_04625
DNA replication proteins [BR:spar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    SPRG_04625
  DNA Replication Termination Factors
   ELG1-RFC complex
    SPRG_04625
Chromosome and associated proteins [BR:spar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    SPRG_04625
DNA repair and recombination proteins [BR:spar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     SPRG_04625
  Check point factors
   HRAD17(Rad24)-RFC complex
    SPRG_04625
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_16 RuvB_N AAA_22 Rad17 AAA_24 Viral_helicase1 nSTAND3 Mg_chelatase AAA_19 NTPase_1 AAA_3 AAA_11 RNA_helicase AAA_5 AAA_30 ATPase_2 AAA_assoc_2 AAA_25 AAA_28 SLFN-g3_helicase IstB_IS21 AAA_18 KTI12
Other DBs
NCBI-GeneID: 24127059
NCBI-ProteinID: XP_012198424
UniProt: A0A067CJR3
Position
Unknown
AA seq 327 aa
MSTSFEAPWVEKYRPTTLSQVVGNSETVSRLRVIAREGNMPNIIISGPPGIGKTTSILCL
ARDLLGDTLTKTAVLELNASDDRGIDTVRNKIKMFAMQKVTMPPNRHKIVILDEADSMTT
AAQQALRRTMEVFSATTRFALACNNSTKIIEPIQSRCAILRYTRLKDEMLLERLVQVCDA
EGVGYSDDGMAALIFTAEGDMRNALNNCQATHSGFGFISDANVFKVCDQPHPTTVKSIVE
ACVAGDIAVAEKEMIALWKTGYSALDIIGTVFRVAKSTDMDDKLKLDFVKCIGQSHMCIA
DGLTTVVQLHGLVARLCAAATSFRDRK
NT seq 984 nt   +upstreamnt  +downstreamnt
atgtcgacctcattcgaagcgccgtgggtcgagaagtaccggccaacgacgctgtcacag
gttgtgggcaacagcgagactgtgagtcgactccgtgtcatcgcgcgcgagggcaacatg
cccaacatcatcatcagcggcccgccgggcattggcaagaccacgtccatcctgtgtctc
gcgcgtgacctccttggcgatacgctgacgaagaccgccgtgcttgagctgaatgcttca
gacgaccgaggcatcgacacggtccggaacaagatcaagatgtttgcgatgcaaaaggtc
acgatgccgcccaaccgccacaagatcgtgatcctcgatgaagctgactcgatgacgacg
gctgcacaacaggcactgcgccgcacgatggaggtctttagcgcaacgacgcgcttcgcg
ttggcgtgcaacaactcgaccaaaatcatcgagccgatacagagccgctgcgccatcttg
cgctacacgcggctcaaggatgaaatgctgctcgagcgcctcgtccaagtatgcgacgcg
gaaggagttggctacagcgatgacggtatggccgccctcatcttcacggcggaaggcgac
atgcgtaatgcgctcaacaattgtcaagcgacacactcgggcttcggctttatcagtgac
gcgaatgtcttcaaagtatgcgatcagcctcacccaacgacggtcaagtccatcgtcgaa
gcgtgtgtcgccggcgacatagctgtcgccgagaaggaaatgatcgcattatggaagact
gggtactctgcgctcgacatcatcggcacagtctttcgcgtcgccaagagcacagacatg
gacgataaactcaagctcgacttcgtcaagtgcattgggcaatcgcacatgtgcattgcc
gatggactcacgacggttgtccagctccacggacttgttgcgcgtctctgcgcggccgcc
acgagcttccgtgaccgaaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (49)   

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