KEGG T00513: Sputcn32

Shewanella putrefaciens CN-32: Sputcn32_1748

Entry

Sputcn32_1748 CDS T00513

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

spc Shewanella putrefaciens CN-32

Pathway

spc03410	Base excision repair
spc03420	Nucleotide excision repair
spc03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:spc03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:spc03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:spc03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1995539..1996468

AA seq 309 aa
MTHTSQLFLLISNPFILLRLLLVSLLLVCLLVNANPSAPKIQLATELTADKTSYDIREFL
ISEKLDGVRGYWTGHRLVTRQGYPINAPVWFTADFPTIPIDGELWLGRGQFEAISSLIRQ
SSPKEDAWRNVRFMVFDLPKAEGNFEQRYRLAIKMFAGKSAYIEVIEQFQLDSIEALYQK
LDSLVVLGAEGLMLHRRSAYYIAGRNPNLMKLKPYFDAEAKVIAHIAGKGQFTGQMGALK
VQTSDGRIFSIGTGFSHAERQHPPAVGTIITYKYLGLTVNGLPRFASFLRVRTDIVESPL
DGGVDRSGQ

NT seq 930 nt +upstreamnt +downstreamnt
atgactcatacaagccaattatttcttttaatctctaatcctttcattctgttgcggtta
ttattagtttccttgctgctggtatgtctattggttaatgccaaccccagtgcgcctaag
atccaacttgccacagagctgactgccgacaagacgagttatgatattcgcgagttttta
atcagtgaaaagttagatggtgtccgtgggtactggactgggcataggttagtcacccgt
caaggatatcccattaatgcacccgtatggtttactgctgattttccgacaattcctatt
gatggagagttgtggcttgggcgagggcagtttgaagctatttcaagtttaatccgtcaa
tcctctcccaaagaggacgcatggcgtaatgtacgctttatggtatttgacttacccaaa
gcggaggggaattttgagcagcgctatcgattagcgataaagatgtttgcaggtaaatct
gcttatattgaggtcattgagcaatttcagcttgatagtattgaggctttataccaaaaa
ctcgatagtcttgtggttttaggtgctgaagggttaatgctccatcgccgcagtgcatac
tatattgcaggccgaaatccaaacttgatgaagttaaaaccctactttgatgcagaagct
aaagtcattgcacatattgcaggtaaaggtcaatttacgggacagatgggggcattaaaa
gtacaaacatccgatggacggatttttagtatcggaacaggctttagtcatgctgagcgc
caacatccccccgcagtgggcactatcatcacctataaataccttgggcttaccgttaac
ggtttaccgcggtttgccagttttttacgggtaagaaccgatatagtcgagtccccattg
gacggcggtgttgaccgttctgggcaataa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SPC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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