KEGG   Shewanella putrefaciens CN-32: Sputcn32_3280
Entry
Sputcn32_3280     CDS       T00513                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
spc  Shewanella putrefaciens CN-32
Pathway
spc02024  Quorum sensing
spc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sputcn32_3280
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Sputcn32_3280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spc03019]
    Sputcn32_3280
   03036 Chromosome and associated proteins [BR:spc03036]
    Sputcn32_3280
Messenger RNA biogenesis [BR:spc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Sputcn32_3280
Chromosome and associated proteins [BR:spc03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Sputcn32_3280
SSDB
Motif
Pfam: Hfq LSM Staphylcoagulse
Other DBs
NCBI-ProteinID: ABP76992
UniProt: A4YAK9
Position
complement(3819335..3819607)
AA seq 90 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPFNVTGHQNAQGGYGPQDDVPSGE
NT seq 273 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagacccatttttgaacgcactacgccgcgagcgcgtt
cctgtatcaatttacttagtaaacggcattaaactccaaggacaggtagagtcgtttgat
caatttgtcattctgttgaaaaacacagtgagccaaatggtatacaagcacgctatttct
acggttgttcctgctcgcccattcaatgtcactggtcaccaaaatgcccagggtggatat
ggtccgcaagacgatgtacctagtggcgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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