KEGG   Solanum pennellii: 107011170
Entry
107011170         CDS       T04130                                 
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
spen  Solanum pennellii
Pathway
spen03420  Nucleotide excision repair
spen04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107011170
  09124 Replication and repair
   03420 Nucleotide excision repair
    107011170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spen04121]
    107011170
   03400 DNA repair and recombination proteins [BR:spen03400]
    107011170
Ubiquitin system [BR:spen04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     107011170
DNA repair and recombination proteins [BR:spen03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      107011170
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107011170
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 107011170
NCBI-ProteinID: XP_015066042
Position
2:complement(17054790..17076208)
AA seq 1095 aa
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSST
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSNIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVP
VEELMKRVEELTRLH
NT seq 3288 nt   +upstreamnt  +downstreamnt
atgagtgtatggaactacgtggttacggctcacaaaccaacaaatgttacacattcctgt
gttggcaatttcaccggtcctcaagagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgcatttgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacacttgagcttttccgtcctcacggtgaaacacaa
gatcttctcttcatcgcaacagagcgatataaattctgtgtccttcaatgggatactgag
gcatctgaagttatcacaagagcaatgggggatgtgtcagaccgaataggccgtcccaca
gataatggtcagattggtataattgatccagattgcagattgatcgggctacatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcttttaac
atcaggctcgaggagcttcaagttttagatattaaattcttgtatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggatgcccgacatgtcaaaacatatgaggtg
tccttgaaagacaaagattttattgaagggccatgggctcaaaataatcttgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtattgattattggagaagaa
accatcgtttattgcagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgagaaggagaaagttaccggactcaaaattgag
ctactgggggaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attggctcaagctacggagattcacagcttgtaaagctcaatctccagcctgacaccaaa
ggttcttatgtggaagttctagagagatatgtcaatttaggacctatcgtggacttctgt
gttgttgatctggaaaggcaaggtcaaggtcaggttgtaacttgctctggagcctataag
gatggatcacttcgtattgttcgaaatggaattggcataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtctcttagatctgctactgatgatccatatgacaca
ttcttggttgttagcttcattagtgagacacgcgttttggctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctgtatacaaccagcttgttcaggttacttcaaattctgttagactggtcagttctacg
tctagagatctgaaaaacgagtggtttgccccagccggctactcggtcaatgttgcaact
gctaatgccactcaggtactattggctactgggggtggccatctggtatacctagaaatt
ggtgatggggtgttgaatgaagtaaaatatgccaagttggattatgatatctcgtgcctg
gacataaatccaattggtgaaaatccgaactacagtaacattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcctgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttctgttctgatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggccatctcttgaattttgtattgagcatgagtactggt
gagctgacagataggaaaaaagtttctcttgggacacagcccataacacttcgtacattc
tcatctaaagatacaacacatgtctttgctgcctccgataggccaacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagccttgcaatcgctaaagaaggtgagttaacaatt
ggcactattgatgaaattcaaaagcttcacattcgttcaataccccttggggagcatgca
cgtcgcatcagccatcaagagcagacccggacatttgctctatgcagtgtgaagtatact
cagtcaaatgcagatgatcctgaaatgcattttgtccgcctgttggatgatcagacattt
gagttcatatcaacatatccccttgaccaatttgaatatggctgttccatactaagctgc
tccttttctgatgatagtaatgtgtattattgcattggaactgcatatgtgatgccagag
gaaaatgaacctactaagggccgaattttagtttttatagttgaagatggaaagctccag
ctaattgctgagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcttcgcgtgaggatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattagctctttatgtt
caaacgcgtggggatttcattgttgttggtgatttgatgaaatccatttctctgctgatt
ttcaagcatgaagagggtgctatagaggagcgagccagagactataatgcaaattggatg
tcagctgttgagattctcgatgatgacatttatcttggtgctgagaataactttaacctt
ttcacggtcaggaaaaatagtgaaggtgctacagatgaggagcgcagccgtcttgaagtg
gttggtgaataccaccttggcgaatttgttaataggtttagacatggttcacttgtcatg
cgactaccagattcagatgttgggcagatacccaccgtcatatttggcacagtgaatggt
gttataggggtgattgcatcactacctcatgatcaatatttatttttggagaagctgcag
acaaacttacggaaagtgataaagggtgtgggaggtctgagccacgagcagtggaggtcg
ttttacaacgagaagaaaacagtagatgctaaaaactttcttgatggagatttgattgaa
tcattcctagatcttagcaggaatcggatggaagagatttcaaaggctatgtcagttcca
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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