KEGG   Solanum pennellii: 107022933
Entry
107022933         CDS       T04130                                 
Name
(RefSeq) probable RNA helicase SDE3
  KO
K18422  helicase MOV-10 [EC:5.6.2.5]
Organism
spen  Solanum pennellii
Brite
KEGG Orthology (KO) [BR:spen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107022933
   03036 Chromosome and associated proteins [BR:spen03036]
    107022933
Enzymes [BR:spen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     107022933
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107022933
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     107022933
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 AAA_19 ResIII DEAD UvrD-helicase AAA_22 AAA_16 Mov-10_helical Flavi_DEAD Helicase_RecD ATPase_2
Other DBs
NCBI-GeneID: 107022933
NCBI-ProteinID: XP_015078984
Position
6:complement(46642433..46645678)
AA seq 911 aa
MATIGYKSDDEYSTITDKGDIGFVDFDKYKSSYSYNPNEESDIVVISVPFPLIEGKPKSG
FVGETVVDSITIENTTNETVELWSIKIYDSKPEDSFTLSLMKPPTACSDLEYVEEFMESF
SLEDRMLQPGRPLTVWLTCKPKEIGLHTSAVHFNVGDDNIERLVFVLAEDNVSQSLASSR
PFHRNRKKKAPAVDVGFVGGSRPTRDSCSIFRHKLPSYSIPRDVREMMEKRKFPDVIGEG
LSRDNYVAYFRTLLSIEEIKMEEDMRDYDMQFVTMKRRGQHFLSLHVPGLAERRPSLVVR
DHIFAKLATAYASEIITPYQGYIHRVEAEDVYLKFDKEFHDNHVGGNLYNVQFAFNRVGV
RRLHQAIEATESLDGEILFPSVISSTRNIQAAVLAPRNSSMLNKEQTSAVEKILGCEGGA
PYIIHGPPGTGKTRTLIEAIIPLHIMRKDARVLVCAPSNSAADHILEKLVSQQNVEVQEH
EIFRLNALTRPLDNVNPSCLRFCNVEDNGFKCPLLRELRRYRIIISTYASAFLLYAQGIK
RGHLSHIFLDEAGQASEPDTMIPLSHLLSKETVVVLAGDPRQLGPVVFSKDAERYGLGRS
YMERLFECELYGSLNENYATRLVRSYRCHPAILKLPSEMFYGGECMSIPCKEDDKTWVDL
LPNKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIQNKGLKEEDIGVITPYR
QQALKIKRALIQSFDWADIKVGSVEQFQGQERQVIIISTVRSTIQHNNFDRIHYLGFLNN
PRRFNVAVTRARSLLVVIGNPHIICKDHYWNKLLWYCAENGSYKGCFLPEKVEIVQDDSE
QANNWDQDQWGYVNNWDQEWGRVNNWDQHEWGQAKNWNDDGNEEKQILQPASVDYTSVPV
MDEAEWSDGWK
NT seq 2736 nt   +upstreamnt  +downstreamnt
atggccacaattggttataagtcggatgatgaatactcaactattactgataaaggagac
atcggatttgtcgactttgacaaatataaatcatcttatagctacaatccaaatgaagag
agtgatatagttgttatatctgttccatttccgctgatagagggaaaacctaaatcaggc
tttgttggggaaactgttgttgattcaatcacaatagagaatactaccaatgaaaccgtg
gagctgtggtcaattaagatctatgactcgaaaccggaggattcattcacgctatctctg
atgaaacctccaactgcttgttctgacttggaatatgttgaagaattcatggagtccttt
agcttagaggatagaatgttacaaccaggtcggccattaactgtatggctgacttgtaaa
cccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggcgatgacaacata
gaaaggttagtttttgtgttagctgaggacaacgtttcccagtccctggcttcgagtagg
ccattccacagaaacagaaagaagaaagcgccagcagtagatgttggattcgttgggggt
tctcgtcctacgagggattcatgtagtatattcagacacaaacttccgtcatattcaatt
ccacgggatgtgagggaaatgatggagaagagaaaatttccggatgttattggggaaggt
ttaagcagagataattatgttgcctattttagaactttactgtcaattgaagaaatcaag
atggaggaagacatgagggactatgatatgcagttcgtcaccatgaagcgtaggggacaa
cactttttgtcccttcatgtcccagggctagctgagaggaggccatcacttgttgttaga
gatcatatctttgcaaagctagctaccgcatatgctagtgagatcattaccccttaccag
ggttatattcaccgagttgaagcagaagatgtatatttgaagtttgataaggaatttcac
gacaaccatgtaggtggaaacctttacaatgtgcagtttgccttcaaccgtgtgggagtg
cggaggttgcatcaagccatagaagctacagaaagcttagatggagaaattctatttccg
tcagtcatatccagcacgagaaacatacaagctgctgtactggcacctcgtaattcatct
atgcttaacaaggagcaaacaagtgctgttgaaaagattctcgggtgtgaaggaggggct
ccatatattatccatgggcctcctggtacaggcaaaacaaggactcttatagaagctatc
atcccgctacatattatgaggaaagatgctcgagttcttgtgtgtgcaccttcaaatagt
gctgcagaccatatacttgagaaacttgtgagtcagcagaatgttgaagtgcaggagcat
gagatatttaggttgaatgcactgacgcgtccattagacaatgtgaatcctagttgcctt
cggttttgcaatgttgaagataatggttttaagtgtcctcttctgagggagcttagaaga
tataggattatcatatctacatatgctagcgcatttcttctttatgcacaaggcatcaaa
cggggacacttgtctcatattttcttggatgaggcaggacaggcatcggagcctgatacc
atgattcctctgtcacatcttttaagtaaggagacagtagttgtactcgctggtgaccca
cggcaacttggtcccgtagttttctcaaaagatgctgaaaggtatggattgggtaggtca
tacatggaaaggttatttgaatgcgagttatatggttctctcaacgaaaattatgctacc
agactagtaaggagctatcggtgtcatccggcaattctgaagcttccctcagaaatgttt
tatggaggagagtgtatgagtatcccatgtaaagaagatgataaaacttgggtggacctg
cttccaaacaaggagttccctttgcttttcattggaatacaaggttgtgatgaaagggaa
ggaaacaacccgtcatggttcaacaggatcgaagcaagcaaggtagtagagatcatcaga
gatctgatacagaacaaaggtctcaaagaggaagatattggggtgataacaccttacagg
cagcaagcattgaaaataaagagagctttaattcagagctttgattgggctgatataaag
gttggcagcgtagagcaatttcaaggtcaggagagacaagttattatcatatccaccgtc
cgatcaactatacagcataataactttgataggatccactatttaggatttttaaataat
ccgagaaggttcaatgttgctgttacaagagctagatcattgcttgtagttattgggaat
ccacacatcatctgcaaggaccactactggaacaaacttttgtggtattgtgcagagaat
ggctcctacaagggctgcttcttgcctgaaaaagtggagattgttcaagacgactcggaa
caagcaaataattgggaccaagaccaatggggatatgttaacaattgggaccaagaatgg
ggtcgagttaacaattgggatcaacatgaatggggacaagctaagaattggaatgatgac
ggcaacgaagagaaacaaattcttcagccagcttcagtggactacacctcggtccctgtt
atggatgaagctgaatggtctgatggttggaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (25)   

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