KEGG   Rhizorhabdus wittichii DC-6: HY78_06960
Entry
HY78_06960        CDS       T05200                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sphd  Rhizorhabdus wittichii DC-6
Pathway
sphd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sphd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HY78_06960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphd03021]
    HY78_06960
   03400 DNA repair and recombination proteins [BR:sphd03400]
    HY78_06960
Enzymes [BR:sphd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HY78_06960
Transcription machinery [BR:sphd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HY78_06960
DNA repair and recombination proteins [BR:sphd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HY78_06960
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ARR53198
Position
1459126..1463493
AA seq 1455 aa
MATQAVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRS
VFPIRDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRS
VLDIKEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFA
ARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIV
AISGVNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILN
YFYRTQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKD
GLETLLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDH
VSTGPWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAV
GRVKLNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELL
ENQYRVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSR
VNKYGFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAG
EFLMAPRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFV
GTGMEETVARDSGAAIAAKRSGIVDQVDATRIVVRATGAVDAGKSGVDIYTLMKFQRSNQ
STCINQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISER
IVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGD
ILCGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDK
DERAMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEEL
LAEVEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMN
VGQIFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIE
GRSTDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFD
RKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYG
AAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSI
EDQSDDDDGLAEAAE
NT seq 4368 nt   +upstreamnt  +downstreamnt
atggccacccaggcagttccggcgaccgccaagaagcgcatccgcaaggtcttcgggaac
atccacgaagtcgtccagatgccgaacctgatcgaggttcagcgcgaatcctacgagcag
ttcctgcggtcgcgcccggccgacggctatgtctcgggcctcgaaaagacgctccgctcg
gtcttcccgatccgcgacttcgccggcaccgccgagctcgacttcgtccagtacgagctg
gaggacccgaagtacgacaccgacgagtgccgccagcgcggcatgacctatgcggcgccg
atgcgcgtcaccctgcgcctgatcgtgttcgaggtcgatcccgacacggagacccgctcg
gtcctcgatatcaaggagcaggacgtctacatgggcgacatgccgctcatgaccgagaac
ggcaccttcctgatcaacggcaccgaacgcgtcatcgtgtcgcagatgcaccgctcgccg
ggcgtgctgttcgaccatgaccgcggcaagacccacgcctcgggcaaatatctgttcgcc
gcgcgcgtcatcccctatcgcggctcgtggctcgacttcgagttcgacgccaaggacatc
gtcaacgtccgcatcgaccgcaagcgcaagctgccggtcacctcgctgctgcgcgcgctg
ggcgacgcggtgatcgaggtcaatcccgacaagggcaagttcgaggccggcgacatcgtc
gccatctcgggcgtcaaccgcgcctgccgggtcaaggcggtcgcgggcaggctcgtcacc
gtcgaggacccgaccggcgcgatcatcccgggcggcctgatccagaccgccgagggcgag
aagatcggccatgtcgcgcgcatccgcctgcagggcatgtcgggcgaggacatcctcaac
tatttctaccgcacgcagcgcttcgtgcgcggcgagaacggctggaaggtccccttcgtc
gccgagaactggcgcggccagaagccggcgttcgacgtcgtcaacgccgataccggcgag
gtcgtcttcccggccggcaccaagatcagcccccgcgccgccaacaaggccggcaaggac
gggctcgagacgctgctgatcccgaccgaccagatcttcggccgctattcggcctatgac
ctgatcgacgagtcgaccggccgcatctacatcgaggccggcgacgaggtgacgccggag
aatctggaagcgctcgacaaggccggcttcgaccatgtcgacctgctcgacatcgaccat
gtctcgaccggcccgtggatccgcaacacgctgaaggccgacaaggtcgaggaccgcgac
catgcgctgagcgagatctatcgcgtcatgcgccccggcgagccgccgacgaaggagacc
gccgaggcgctgttcgccgggctgttcttcgactccgagcgctacgacctgtcggccgtc
ggccgcgtcaagctcaacatgcgcctcgaactcgacgccgaggacaccgtcaccaccctc
cgctcggaggacatattggcggtggtcaagacgctggtcgacctgaaggacggcaagggc
gagatcgacgacatcgacaatctcggcaaccgccgcgtccgttcggtcggcgagctgctg
gagaaccagtatcgcgtcggcctgctccgcatggagcgcgccgtgaaggagcggatgtcg
tcggtcgacgtgtcgacggcgatgccgaacgacctgatcaacgccaagccggcggtcgcc
gcggtgcgcgaattcttcggctcgtcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcgccgcgtctcggcgctcgggccgggcggcctcacccgc
gagcgcgcgggcttcgaggtccgcgacgtccatccgacccattatggccgcatctgcccg
atcgagacgccggaaggcccgaacatcggcctgatcaactcgctggcgagcttcagccgg
gtcaacaaatacggcttcatcgagacgccgtaccgcaagatcgtcgacggcaaggtgacc
aacgaggtcgtctacctgtcggcgatggaggaggccaagcacaccatcgcgcaggcgaac
gccgagctcgatagcgagggccgcttcgtcgaggacctgatctccgcccgcgaggccggc
gagttcctgatggcgccgcgcgaccatgtcacgctgatggacgtcagccccaagcagctc
gtctcggtcgccgcgtcgctgatcccgttcctggagaatgacgacgcgaaccgcgcgctg
atggggtcgaacatgcagcgccaggcggtgccgctggtccgcgccgaggcgccgttcgtc
ggcaccggcatggaagagacggtcgcccgcgattcgggcgccgcgatcgccgccaagcgc
tcgggcatcgtcgaccaggtcgacgcgacccgcatcgtggtccgcgccaccggcgcggtc
gacgccggcaagtcgggcgtcgacatctacacgctgatgaagttccagcgctcgaaccag
tcgacctgcatcaaccagcgcccgctggtgaaggtgggcgacgtggtcaacgccggcgac
atcatcgccgacggcccgtcgaccgagttcggcgagctggcgctgggccgcaacgtcctc
gtcgcgttcatgccgtggaacggctacaactacgaggactcgatcctgatctccgagcgg
atcgtgaaggacgacgtcttcacctcgatccacatcgacgagttcgaggtgatggcccgc
gacaccaagctcgggccggaggacatcacccgcgacatcccgaacgtcggcgaggaagcg
ctgcgcaacctcgacgaggcgggcatcgtctatatcggcgccgaggtcgagccgggcgac
atcctgtgcggcaagatcacgccgaagggcgagagcccgatgacgccggaggagaagctg
ctccgcgccatcttcggcgagaaggcctccgacgtccgcgacacctcgctgcggctgccg
ccgggcgtgtcgggcaccgtcgtcgacgtgcgcgtgttcaaccgccacggcatcgacaag
gacgagcgcgcgatggcgatcgagcgcgaggagatcgaccgcctgaccaaggaccgcgag
gacgagcgcgccatcctgaaccgcgccaactacgcgcggctcaaggagatgctgctcggc
cagatcgcgaccgcggcgccgaagggcatcaagaagggctccgagatcaacgaggagctg
ctcgccgaggtcgagaagcgcgaatggtggaagttcgcggtgcaggacgacgcccgccag
gcggacctggaggcggtcaaggcccagtatgacgacgccgtcggcctgatcgtcaagaag
ttcgaggaccgggtcgagaagctgcagcgcggcgacgagctgcccccgggcgtgctcaag
atggtcaaggtgttcgtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgccacggcaacaagggcgtgatcagccgcatcctgccgcaggaggacatgccgttcctg
gaggacggcacccccgtcgacatcgtgctcaacccgctcggcgtgccgagccgcatgaac
gtcggccagatcttcgagacgcacctcggctgggccgcccgcggcctgggcaagcaggtg
acgagcgccctcgaagcctggcgcgaggccaatcccgacgcgcaggcggcgaccccgccg
gcggcggtcgtcgaccggctgaaggaggtgtacggcaaggaatatcatgccgacatcgaa
ggccgctcgaccgaccagatcgtcgagatggcgggcctgctgaagaacggcgtgccgatg
gcgacgccggtgttcgacggcgcccgcgaggcggacgtggccgagatgctgcgccgcgcc
gggctcgacgagagcggccaggtggaactgttcgacgggcgcaccggcgaccagttcgac
cgcaaggtgacggtgggctacatctacatgctgaagctccaccacctcgtcgacgacaag
atccacgcgcgctcgatcggcccgtacagcctggtcacccagcagccgctgggcggcaag
gcgcagttcggcggccagcgcttcggcgagatggaggtatgggcgctccaggcctatggc
gccgcctacacgctgcaggagatgctgacggtgaagtcggacgacgtggtcggccgcacc
aaggtctacgaggcgatcgtcaagggcgacgacaccttcgaggccggcatccccgagagc
ttcaacgtgctcgtcaaggaaatgcggtcgctcggcctcaacgtcgagctgtcctcgatc
gaggaccagtccgacgacgacgacggcctggccgaagcagcggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system