KEGG   Sphingorhabdus sp. YGSMI21: CHN51_03765
Entry
CHN51_03765       CDS       T05308                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sphy  Sphingorhabdus sp. YGSMI21
Pathway
sphy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sphy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CHN51_03765 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphy03021]
    CHN51_03765 (rpoC)
   03400 DNA repair and recombination proteins [BR:sphy03400]
    CHN51_03765 (rpoC)
Enzymes [BR:sphy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CHN51_03765 (rpoC)
Transcription machinery [BR:sphy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CHN51_03765 (rpoC)
DNA repair and recombination proteins [BR:sphy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CHN51_03765 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: ATW02741
UniProt: A0A2D3RAM7
Position
791022..795425
AA seq 1467 aa
MNQVTNFANPIAKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIDLAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYVVIEPGLTALEKFQLLTEDEMLEAQDEYGEDAFSAG
IGAEAVKIMLQDLDLKQERDDLMEELRTTKSTLKPKKIIKRLKVVESFIDSGNKPEWMIL
EIIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLTMDRKGEPGEGMMLADMAEVHQALEI
GAVTLHSKITTRVPQTDEEGNPILKRFETTPGRLLIAECLPKSHLVPFDIVNRLLTKKEV
GDVIDQVYRHTGQKDTVLFADAIMGLGFRHACRAGISFGKDDMIIPDSKDATVEETRTLV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDTVANAMMDELAATPEDEHGREREINAIYMM
SHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTIVEEDCGTENALEMKAIVQGGSVIASLGERILGRTMA
EDIVDSKDDSVVIKAGTLLDEAAILVIEELGIQSARIRSPLVCESKMGVCGTCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLESVAEGVVEYRDMPVI
EDKNGRFLSLARSGIIAVIDNDGRERSADKVPYGTSVLVKDGAKVKLGDRLAEWDPFTMP
MITEKPGVIKFQDVIEGKTMTEQTDEATGIAQRVITEYRASGRGANKEDLRPRLTLLDEN
SGEAGRYMLANGATLSVEDGAKVAAGDVLARVSREAAKTRDITGGLPRVAELFEARIPKD
NSIIAKIDGRIEFVRDYKAKRKIAIVPEEGEPVEYLVPKTKVIDVQEGDFVKKGDNLVSG
SPDPHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITNGGDTT
LLPGEQVDLEEMLEYNAKLTKKQEPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDQLIGLKENVIVGRLIPAGTGAGMNRARIAATSRDAALRAQQQKMLDAMQAAA
DLKAEEVSNAAATAPAADAEPTAADVFGEAPVEEALIAADSSEEQHAAELAQGDEAATGD
SHMAKTMGEGIEASDTEAAQSDEDKDE
NT seq 4404 nt   +upstreamnt  +downstreamnt
atgaatcaagtaacaaattttgcaaatccgatcgcaaaaccggaaacatttgaccagatc
cagattggccttgcctcgccagagcgtatccgcagctggtcctttggcgaaatcaagaag
cctgaaaccatcaactaccggaccttcaagccggaacgtgatggcctgttctgcgcgcgt
atcttcggtccggtaaaggattacgaatgcctgtgcggcaagtacaagcgcatgaaatac
aaaggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtaaccaaggttcgccgcgaa
cgcatgggtcatatcgaccttgctgctccggtcgcccatatctggttcctgaaatcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctggagcgcgtgctctat
ttcgaaagctatgtggttatcgaacccggtttgacggctctggaaaaattccagctgctg
accgaagacgaaatgctcgaagcgcaggatgaatatggtgaagacgcgttctccgccggc
atcggcgcagaagcggtcaagatcatgctgcaggacctggacctgaagcaggaacgcgac
gacctgatggaagagctgcggacgaccaagtcgacgctgaagcccaagaagatcatcaag
cgcctgaaagtggtcgaaagcttcatcgattccggcaacaagccggaatggatgatcctc
gaaatcattcccgtgattccacccgagctgcgcccgctggtgcctctggatggcggccgt
ttcgcgacctccgatctcaacgatctctatcgtcgcgtgatcaaccggaacaaccgtctg
aagcgcctgatggagctccgcgcgccggacatcatcgtccgtaacgagaagcgcatgctt
caggaatcggtcgacgcattgttcgacaatggccgtcgtggccggaccatcaccggtgcc
aacaagcgtccgctgaaatccctgtccgacatgctcaagggcaagcagggccgtttccgc
cagaatcttctcggcaagcgcgtcgactattccggccgttcggtgatcgtgaccggtccc
gaactgaaattgcatcagtgcggtttgccgaagaaaatggcattggaactgttcaagccg
tttatctacgcgcggcttgatgccaagggcctttcgatgacgctcaagcaggccaagaaa
tgggtcgaaaaagagcgcaaggaagtctgggacattcttgaggaagtgattcgcgaacat
ccggtgatgctgaaccgcgcaccaacgcttcaccgtctcggcatccaggcgttcgaaccg
gtattgatcgaaggtaaagccatccagcttcacccgctggtctgctccgccttcaacgcc
gactttgacggtgaccagatggcggtccacgttccgctgagcctcgaggcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgccagccaacggcaagccgatc
atcgttccttcgcaggatatggttctcggtatctattatctgacaatggatcgcaaaggc
gagccgggcgaaggcatgatgctggccgacatggccgaagtgcatcaggctctggaaatc
ggtgcggtgaccctgcactccaagatcaccacccgggttccgcaaaccgacgaggaaggc
aaccccatcctcaagcgtttcgaaaccacgccgggccgtctgctgatcgccgaatgtctg
ccgaaatcgcacctcgtgccgttcgacatcgtcaaccgcttgctgaccaagaaagaagtc
ggcgacgtgattgaccaggtctatcgtcacaccggtcagaaagacaccgtcctgttcgcc
gatgcgatcatgggccttggtttccgccacgcttgccgcgccggcatttccttcggcaag
gacgacatgatcattccggattccaaggatgcaacggttgaggaaacccgcaccctggtg
gctgactatgagcagcaatatcaggatggtctgatcacccagcaggaaaaatataacaag
gtgatcgacgcctggtcccgctgtggtgacacggttgcgaacgcgatgatggacgagctg
gccgcgacgccggaggacgaacatggccgcgaacgcgagattaacgcgatctacatgatg
agccactccggcgcccgtggttcgccagcccagatgaagcagctgggcggcatgcgcggc
ctgatggcgaaaccttccggcgagattattgaaacaccgattatctcgaactttaaggaa
ggcctgacggttctggaatatttcaactccacccatggtgcccgtaagggtcttgcggat
acggcgttgaaaacggccaactcgggttatctgacccgtcgtctggttgacgtttcgcag
gattgcacgatcgtcgaggaagattgcggcaccgaaaatgcgctggagatgaaagccatc
gtccagggcggctcggtcatcgcttcgcttggcgaacgtatccttggccggaccatggcc
gaagatattgtcgacagcaaagacgacagcgtcgtgatcaaggccggcaccctgctggac
gaagccgccatattggtgatcgaggagctcggcatccagtccgcgcgcattcgctcgccg
ctggtctgcgaatccaagatgggcgtctgcggcacctgctacggtcgtgaccttgcccgc
ggtacaccggtgaatatcggtgaagcggttggcgttattgcggcccagtcgatcggtgag
ccgggcacgcagctgacgatgcggaccttccacatcggcggcgcggcacagctcaacgag
cagtccaatctggaatcggtggcagaaggtgttgtcgaatatcgcgacatgccggtcatc
gaggacaagaacggtcgcttcctctcgctggcgcgtagcggcatcatcgccgtgatcgac
aatgacggtcgcgaacggtctgccgacaaggtgccttatggtaccagcgtgctggtcaag
gatggcgccaaggtgaaactgggcgatcgtctggccgaatgggatccgttcaccatgccg
atgatcaccgagaagccgggtgtcatcaagttccaggacgtcatcgaaggcaagacgatg
accgaacagaccgatgaagccaccggtatcgcacagcgtgtgatcaccgagtatcgcgct
tccggccgtggagccaataaggaagaccttcgcccgcgcctcaccctgctggatgagaat
agcggagaagccggccgctacatgctcgccaatggtgcaaccctgtccgtcgaagacggt
gccaaggttgctgccggtgacgtgctggcgcgtgtctctcgcgaagctgcgaagacccgc
gacattaccggtggtctgccccgtgtggccgagctgttcgaagcgcgcattccgaaggac
aattcgatcatcgccaagatcgacggacggattgaattcgttcgcgactataaagcgaaa
cgcaagatcgcgattgtgccggaagaaggcgaaccagtcgaatatctggtgccgaagacg
aaagtcatcgacgtgcaggaaggcgatttcgtcaagaagggcgacaacctggtttccggt
tctccggacccgcatgacattctggaagttctcggggttgaggcgctggccgaatatctc
gtttcggaaatccaggaagtctatcgtctgcagggcgtgaagatcaacgataagcacatt
gaaacgatcgttcgtcagatgctgcagaaagttgaaatcaccaatggcggcgatacgacg
ctgctgccgggcgaacaggtcgatctcgaagaaatgctggaatataacgccaagctgacc
aagaagcaggaacctgctgccggcaagccggttctcctcggtatcaccaaggcgagcctg
cagacgcgcagcttcatctctgcggcttctttccaggaaaccacccgggtgctcacccag
gcggctgtcgagggcaagaaggatcagctgatcggtctcaaggagaacgtgatcgttggt
cgcctgatcccggccggtaccggtgcgggcatgaaccgtgcgcgtatcgccgcaaccagc
cgcgatgcagccctgcgggcgcaacagcagaaaatgctggacgcgatgcaggctgcggct
gatctgaaggcggaagaagtgtccaatgctgcggcgaccgctccggctgccgatgcagag
ccaactgcggcggatgtgttcggcgaagctccggtcgaggaagccctgattgctgcggat
agctccgaggaacagcatgcagccgaactggcccagggcgatgaagccgctaccggcgat
tcccacatggcgaaaaccatgggtgaaggcatcgaggcaagcgataccgaagccgcccag
agcgacgaagacaaagacgaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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