KEGG T00606: Spea

Shewanella pealeana: Spea_2511

Entry

Spea_2511 CDS T00606

Definition

DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

spl Shewanella pealeana

Pathway

spl03410	Base excision repair
spl03420	Nucleotide excision repair
spl03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:spl03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:spl03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:spl03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3059563..3060438)

AA seq 291 aa
MLSIRFINSFLRLCLISLITVNYSYANNTDIRTPNKPAIQLASAFDESISDITQYLVSEK
LDGVRGYWDGKVMYSRSGRQIALPDWFVAGFPSYPLDGELWIKRGMFEQVSAMVRSSKVS
DEEWARVKFMIFDLPAESSVFELRYRKAVKELAGISPYLKVIGQNQFDSFQALEAELQKV
IAKNGEGLMLHKKHAFYKSGRSKDIVKLKPFYDAEARVIGYTSGKGRFSGMMGALVVKNQ
QGITFNLGTGFSKEQRQSPPQIGSLVTYKYYGLTQKGTPRFASFLRVRHAK

NT seq 876 nt +upstreamnt +downstreamnt
atgttatcaattcggtttatcaattcatttctcaggctttgtttaatcagcctcatcact
gtcaattatagctacgccaataacacagacattcgaactccaaataaacctgctattcaa
cttgcatctgcattcgacgagtcaatttcggatataacgcaatacttggtgagcgaaaaa
ctcgatggtgttaggggctactgggatggcaaagtgatgtacagccgttccggccgccaa
attgcattacccgattggtttgtagcgggctttcctagctaccctttagatggtgagtta
tggattaaacgagggatgtttgagcaagtatcggcaatggttagaagctccaaggtgagt
gatgaagagtgggccagagttaaatttatgatttttgacttacccgccgagtccagtgtt
tttgaattgcgctaccgaaaggctgtaaaagaattggctggtatcagtccatacttaaag
gtgattggtcaaaatcagttcgatagttttcaggcgttagaggcagagttacagaaggtc
attgcgaaaaacggtgaaggactcatgcttcataagaaacatgctttttataaatcaggt
cgtagcaaagacatagttaaactaaaacctttttatgatgctgaagcaagagtcataggt
tatacgtctggtaaggggcgttttagtggcatgatgggagccttggtggttaaaaatcag
caggggatcacattcaacttaggaacagggttcagtaaagaacaaaggcagagtccacca
cagattggcagcttagtgacatataagtattacgggctgacacaaaaaggtacaccaaga
tttgcgagctttttaagggtgagacatgctaaatag

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SPL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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