KEGG   Sphingomonas sp. LK11: AV944_01090
Entry
AV944_01090       CDS       T04954                                 
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K10857  exodeoxyribonuclease X [EC:3.1.11.-]
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:splk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    AV944_01090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:splk03400]
    AV944_01090
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     AV944_01090
SSDB
Motif
Pfam: RNase_T Fic-like_C
Other DBs
NCBI-ProteinID: APX64668
Position
228902..229663
AA seq 253 aa
MQRPQPQIIRVIDLETTGQAPPTHGVCEIGWQDVALGKDGRWELEGEGGSILVNPGRPIP
PITQAIHHILDEQVADAPWWHDVARRVLDPWPRRLALAAHRADFEQQYCTPAMTQSADWI
CTWKCALRLWPDSPSFSNQVLRYWRKPHGLIHERGLPIHRAFPDAYVTAHHLRDQLNEAS
LAQLLEWSRSPGLLPRVRYGPDRGKDWREIDEDSLIGFLSDRDPDVRFTAETEMARRRGG
GHVGRPSPQELLL
NT seq 762 nt   +upstreamnt  +downstreamnt
atgcagcgtccccagcctcagatcatccgcgtcatcgacctggagaccaccggacaggcc
ccgcccacgcacggcgtgtgcgagatcggctggcaggatgtcgcgctgggcaaggacggc
cgctgggagctggagggcgaaggcggcagcatcctggtcaatcccggccgccccattccg
ccgatcacccaggccatccatcatatcctggacgaacaggtcgccgacgctccctggtgg
catgacgtcgcgcgccgcgtgctcgacccctggccgcgccgcctggcgctcgcggcgcat
cgcgccgatttcgagcagcaatattgcaccccggccatgacccagtcggccgactggatc
tgcacctggaaatgcgcgctgcgcctgtggcccgacagccccagcttctccaaccaggtg
ttgcgttactggcgcaagccgcacggactgatccatgagcgcggcctgcccatccaccgc
gccttcccggacgcctatgtcaccgcgcatcacctgcgcgaccagctgaacgaggcgagc
ctggcgcagctgctggaatggtcgcgcagtccggggctgttgccgcgtgtccgctacggc
cccgatcgcggcaaggactggcgcgagatcgacgaggactcgctgatcggcttcctcagc
gaccgcgatccggatgtccgattcaccgccgagaccgagatggcgcggcggcgtggcggc
ggccatgtcgggcggcccagcccccaggaactgctgctgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

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