KEGG   Sphingomonas sp. LK11: AV944_04695
Entry
AV944_04695       CDS       T04954                                 
Name
(GenBank) DNA repair protein
  KO
K10979  DNA end-binding protein Ku
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:splk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AV944_04695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:splk03400]
    AV944_04695
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AV944_04695
SSDB
Motif
Pfam: Ku DsrD
Other DBs
NCBI-ProteinID: APX65259
Position
complement(982966..983853)
AA seq 295 aa
MPARAYWQGQIRLALVSIPVEIYPATKSGATIQFKQIHEPSGKPIHYEKVVNDIGPVDTD
EIVKGYQVAKGDYVLLDQDEIDAVKLESKKTLELTRFVDAGEINVLYYERPYFVVPADDL
AEEAFIVLREALKRTGKVGLGQLALRGREYIVSLRPCGRGLILETLRYADEVNKAQSYFS
DIGDAKPDAELLDLAEALIEKKSGPFDPKQFHDHYVEALHRLIERKRKAKGKKVIEDEED
ATPKSSGNVADLMAALKQSMETGETRSRSRKAPAQTTRKTPAKKTTRKAPARKHG
NT seq 888 nt   +upstreamnt  +downstreamnt
atgcccgcacgcgcttactggcagggccagatacgcctcgcgctcgtatcgatcccggtc
gagatctatccggcgaccaaaagcggcgcgaccatccagttcaagcagatccacgaaccc
agcggcaagccgatccattacgaaaaggtcgtcaacgacatcggcccggtcgacaccgac
gagatcgtgaagggctatcaggtcgccaagggcgattacgtcctgctcgaccaggacgag
atcgacgcggtcaagctggagtcgaagaagacgttggagctgacccgcttcgtcgatgcg
ggcgagatcaacgtcctttactatgagcgcccctatttcgtcgtgcccgccgacgatctg
gccgaggaagcctttatcgtcctgcgcgaggcgttgaagcggacgggcaaggtcgggctg
ggccagctggcgctgcgggggcgcgaatatatcgtcagcctgcggccctgcgggcgcggg
ctgatcctggagacgctgcgctacgccgacgaggtgaacaaggcgcaaagctatttcagc
gacatcggcgatgccaagcccgatgccgagctgctcgatctggccgaagcgttgatcgag
aagaagtccggccccttcgaccccaagcaattccacgatcattatgtcgaggcgctgcac
cgcctgatcgaacgcaagcgcaaggccaagggcaagaaggtcatcgaggacgaggaggac
gcaacgcccaagtcgagcggcaatgtcgccgacctgatggcggcactcaaacagtcgatg
gagacgggcgagacgcgcagccgatcccgcaaggctccggcccagacgacccgcaagacg
cctgcgaaaaagaccacccgcaaagccccggcgcgcaaacatggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

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