KEGG   Streptococcus pneumoniae gamPNI0373 (virulent serotype 1): HMPREF1038_01242
Entry
HMPREF1038_01242  CDS       T02334                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
spng  Streptococcus pneumoniae gamPNI0373 (virulent serotype 1)
Pathway
spng03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spng00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HMPREF1038_01242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spng03400]
    HMPREF1038_01242
DNA repair and recombination proteins [BR:spng03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HMPREF1038_01242
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HMPREF1038_01242
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 Kinesin AAA_7 Microtub_bd DUF2299 AAA_22 AAA AAA_16 AAA_5 AAA_14 AAA_19 AAA_25 PHP HTH_22
Other DBs
NCBI-ProteinID: AFS43281
Position
complement(1148270..1150258)
AA seq 662 aa
MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDR
SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
IAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
LD
NT seq 1989 nt   +upstreamnt  +downstreamnt
atgatcaatcacattacagataatcaatttaaactagtatcaaaatatcaaccatcagga
gatcaaccccaagctatcgagcagttggtggataacattgaggggggagaaaaagctcag
attctgatgggggcgactggaacagggaagacctatactatgagtcaggtcatttctaaa
gtcaataaaccaactctggttattgcccacaataaaactctggctggtcagctctatggg
gagtttaaggaatttttccctgaaaatgcagttgagtatttcgtatcctactatgattat
taccagccagaggcctatgtcccttctagcgatacctatattgagaaggatagttctgtc
aatgacgagattgacaagcttcgccactcagctacctcagcccttttggagcgtaatgat
gttattgtcgtggcctcagtctcttgtatctatggtttgggttcgcccaaggaatacgct
gatagtgtcgttagtctccgtcctggtctagagatttctcgtgataaactcttgaatgac
ttggtcgatattcagtttgaacgtaatgatattgatttccaacgcggaagatttcgcgtt
cgtggggatgtggtagagattttcccagcttcccgagatgaacatgcctttcgagtagaa
ttttttggagacgaaattgaccgtattcgtgaagttgaggctctgacaggtcaggtgttg
ggagaagtggatcatttagcgattttcccagcgacacactttgtgaccaatgacgaccac
atggaagttgccattgcaaagattcaggccgagttggaagaacaattagctgtctttgaa
aaggaaggtaaactgcttgaagcccagcgtttgaaacagcggacagagtatgatatcgaa
atgttgcgtgagatgggctataccaatggggttgaaaattattctcgccacatggatgga
cggagcgaaggagagcctccttatacgcttctcgacttcttcccagatgatttcttgatt
atgattgacgagagtcatatgaccatagggcaaatcaagggcatgtacaatggagaccgt
tcgcgtaaagaaatgctggttaattatggtttccgtttgccgtctgctttggacaatcgt
cctctccgtcgggaggagtttgagagtcacgttcatcagattgtttacgtttcagcgaca
cctggtgactatgaaaatgaacagaccgagacagtgattgagcaaatcattcgtccaacg
ggactcttggatccagaggtggaagtccgtccgactatgggacagattgatgacctcttg
ggtgaaatcaatgcccgcgttgaaaaaaatgagcgtacctttatcacaactttgaccaag
aaaatggcagaggacttgaccgactacttcaaggaaatgggtatcaaggtcaagtacatg
cactcggatatcaagaccttggaacggacggagattatccgtgacctgcgcttgggtgtc
tttgatgtcttggtcggaattaacctgctccgtgaaggaattgacgttcctgaagtgagc
ctcgtagctattctcgatgctgacaaggaaggtttccttcgcaacgaacgtggactcatc
cagactattggacgtgctgctcgtaacagtgaaggccatgtcatcatgtatgcagacacg
gttacccagtctatgcaacgtgctatcgatgaaactgcccgccgtcggaaaattcagatg
gcctataatgaagagcatggtatcgtaccacagacaatcaagaaagaaatccgtgacctg
attgccgtgaccaaggcagttgcgaaggaagaggacaaggaagtcgacatcaatagcctc
aacaaacaagagcgcaaagaactcgtcaagaaactagaaaaacaaatgcaagaagccgtc
gaagtgcttgactttgaactggcggctcagatccgtgatatgatgttggaagtcaaggcc
ttggattag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (20)   
   Pfam (20)   
All databases (27)   

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