KEGG T00076: SPAC20G8.01

Schizosaccharomyces pombe (fission yeast): SPAC20G8.01

Entry

SPAC20G8.01 CDS T00076

Gene name

cdc17

Definition

ATP-dependent DNA ligase Cdc17 (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

spo Schizosaccharomyces pombe (fission yeast)

Pathway

spo03030	DNA replication
spo03410	Base excision repair
spo03420	Nucleotide excision repair
spo03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:spo03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:spo03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:spo03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:spo03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

UniProt:

Position

I:join(1387944..1388026,1388067..1388574,1388637..1390352)

AA seq 768 aa
MRTVFSQIPRFKQVNQYIRMSTRQSDISNFFISSASHKSEHVEVSQSSSDSKNVDGRSTS
EKRKVESVKLVDESKHNNHDDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSG
ASTPIPLPIKEPPLESNARNDKLKGHATFAEMVKAFTKIENTSKRLEIIDIMGTYFFGIL
RDHPSDLLACVYLSINKLGPDYSGLELGIGESIIMKAIGESTGQTLQQIKLSFHKVGDLG
LVAQTSRQNQPTMFKPAALTIPFLFDSLKKIAQMSGNQSQNRKIGVIKRLLSSCEGAEPK
YLIRALEGKLRLQLAEKTILVALANATAQYHADKNGEKLSQQDRIEGEQILRDVYCQLPS
YDLIVPHLIEHGLGTLRETCKLTPGIPTKPMLAKPTKQISEVLNTFDQAAFTCEYKYDGE
RAQVHFTEDGKFYVFSRNSENMSVRYPDISVSVSKWKKPDARSFILDCEAVGWDRDENKI
LPFQKLATRKRKDVKIGDIKVRACLFAFDILYLNGQPLLETPLNERRKLLYSMFQPSTGD
FTFAKHSDQKSIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLS
GVGDSLDLIVIGAYYGKGKRTSVYGAFLLGCYDPDTETVQSICKLGTGFSEEHLETFYNQ
LKDIVISKKKDFYAHSDVPAHQPDVWFEPKYLWEVLAADLSLSPVYKAAIGYVQEDKGIS
LRFPRFIRIREDKSWEDATTSEQVSEFYRSQVAYSQKEKEGSPAAEDY

NT seq 2307 nt +upstreamnt +downstreamnt
atgcgaacagtattttcgcaaattcctcgttttaaacaagtcaatcagtacatacggatg
tcgacaaggcagtcagacattagcaacttcttcatttcttctgcttcgcacaaaagcgag
cacgtggaggtttctcaatcgtcttctgattccaaaaatgttgatgggagaagcacaagc
gaaaagagaaaggtcgaatcagtgaaattagtcgacgagtcgaaacacaacaaccacgac
gacactggaactcaaaatgttgagcgtgaaaataatattgtgtctgaggcaaaaaagcaa
aagactttaggttcatcctcctcttcttcagatgccgtatctagtaacaacgattctggg
gcatctactccaatacctttgccaatcaaagaaccaccgttagagtccaatgctcgcaat
gataagttaaaaggtcatgcaacatttgctgaaatggtaaaagcattcacaaaaatagag
aatactagcaaacggttggaaatcattgatataatggggacttacttttttggaattctt
cgcgaccatcccagcgatttactggcctgtgtgtatttaagtatcaataagttgggccca
gattactcgggactagagctaggaattggcgaaagcattataatgaaggctattggagag
tctacagggcaaacgcttcaacagattaaactatcgtttcacaaagttggtgatcttggt
cttgtagctcaaacatcccgtcaaaatcaacccactatgtttaaacctgcagcgctgaca
attccatttttatttgactcattaaaaaaaattgctcaaatgagcggaaaccaatcccaa
aatagaaaaattggagtgatcaagcggctattgagttcctgtgaaggtgcagaacctaaa
tatttgattcgagctttggaaggcaagctacgcctccaacttgccgaaaaaaccatttta
gtagcattagcaaatgccaccgctcaatatcatgctgataagaatggagaaaaactttcg
caacaagacaggattgaaggagagcagattcttcgagatgtttactgtcaactgccttca
tacgaccttatcgttcctcacttgattgagcatggacttggtactttgcgtgaaacttgt
aaattaacacctggaatcccaacaaaacccatgctggctaagccgacgaaacaaatttca
gaagttttgaatacgtttgatcaagccgcatttacatgtgaatacaaatacgatggcgag
cgcgcccaagttcattttaccgaagatgggaagttttatgtattttctaggaattctgaa
aacatgtctgttcgctatccggacatctctgtttctgtatcgaagtggaaaaaaccagat
gctcgttcttttattctcgattgcgaagctgtcggttgggaccgtgatgaaaacaaaatt
ttaccttttcaaaaacttgcaacaagaaagaggaaagatgtgaaaattggggacattaag
gtccgagcatgccttttcgcttttgacattttatacctaaatgggcaacctcttttggaa
accccactcaacgagcgtcgaaaactactttactcaatgtttcaaccaagtactggagac
tttacttttgctaaacatagcgatcaaaagtctattgaatccattgaagaattccttgaa
gaatctgtcaaagattcttgtgagggtttaatggtcaaaatgcttgaaggcccggattct
cattatgaaccgtcaaaacgttccaggcattggctaaaagttaaaaaagactatctttct
ggtgttggagattctctggatttgattgtaattggcgcatactacggaaagggtaaacgt
acttctgtttatggtgcctttcttttgggctgctacgatccagataccgaaacagttcaa
tcgatttgcaaactcgggactggtttttcagaggagcatttagaaactttttacaatcaa
cttaaagacattgttatatctaaaaagaaagatttttatgctcatagcgatgtacctgcg
catcagcctgacgtctggtttgagcctaagtacttgtgggaagtcttagctgccgattta
tctttgtctccggtttacaaagctgcaattggatatgttcaagaggacaaaggaatcagt
ttacgttttccaagattcattcgtattcgggaagacaagagctgggaggatgctacaaca
agtgaacaggtttcagaattctatcgttcgcaggtggcttacagtcaaaaggaaaaagaa
gggtccccagctgccgaagattattaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB-SPO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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