KEGG   Schizosaccharomyces pombe (fission yeast): SPBC11G11.06c
Entry
SPBC11G11.06c     CDS       T00076                                 
Symbol
sme1
Name
(RefSeq) Sm snRNP core protein Sme1
  KO
K11097  small nuclear ribonucleoprotein E
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPBC11G11.06c (sme1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC11G11.06c (sme1)
   03041 Spliceosome [BR:spo03041]
    SPBC11G11.06c (sme1)
   03032 DNA replication proteins [BR:spo03032]
    SPBC11G11.06c (sme1)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     SPBC11G11.06c (sme1)
Spliceosome [BR:spo03041]
 Complex A
  U1 snRNP components
   Sm proteins
    SPBC11G11.06c (sme1)
  U2 snRNP components
    SPBC11G11.06c (sme1)
 Complex B
  U1 snRNP components
    SPBC11G11.06c (sme1)
  U4/U6.U5 tri-snRNP components
    SPBC11G11.06c (sme1)
 Complex C
  U2 snRNP components
    SPBC11G11.06c (sme1)
DNA replication proteins [BR:spo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     SPBC11G11.06c (sme1)
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 2539607
NCBI-ProteinID: NP_595724
PomBase: SPBC11G11.06c
Ensembl: SPBC11G11.06c
UniProt: Q9USZ3
Structure
Position
II:complement(1763466..1765258)
AA seq 84 aa
MSGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVD
AKNNKRELGRILLKGDNITLIQAI
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcaggacgcgtgcaaaaagttatgatacctcctattaatttcattttcaaattgttg
caacaacatactcctgtttcaatttggctgtttgaacaaacagatataagacttcaggga
caaattaggggcttcgacgaatttatgaacattgtgcttgacgatgctgtgcaagtagat
gctaaaaataataaaagggagttaggtagaattctattaaaaggtgataatattacacta
attcaagcaatctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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