KEGG T00076: SPCC1620.01c

Schizosaccharomyces pombe (fission yeast): SPCC1620.01c

Entry

SPCC1620.01c CDS T00076

Gene name

lsm2

Definition

U6 snRNP-associated protein core protein (predicted)

Orthology

K12621

U6 snRNA-associated Sm-like protein LSm2

Organism

spo Schizosaccharomyces pombe (fission yeast)

Pathway

spo03018	RNA degradation
spo03040	Spliceosome

Module

spo_M00396	Lsm 2-8 complex
spo_M00397	Lsm 1-7 complex

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:spo03040]
Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:spo03018]

SSDB

Motif

Pfam:

LSM SM-ATX DUF1461

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

UniProt:

Position

III:complement(join(2144171..2144196,2144255..2144357,2144710..2144811,2144865..2144924))

AA seq 96 aa
MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL
FIRGSVVRYVHMSSAYVDTILLADACRRDLANNKRQ

NT seq 291 nt +upstreamnt +downstreamnt
atgttgttttactcattttttaagacattaatagacacggaagttaccgtggaattgaag
aatgatatgagtatccgaggaattttgaaatctgttgaccagtttttaaacgttaagctt
gaaaatatttctgtggtcgatgcgtcgaaatatcctcatatggctgctgttaaagatttg
tttattcgtggtagcgttgttcgttacgtccatatgtcaagtgcatatgttgatactatt
ttattagctgatgcttgtcgtagagacttggctaataataagcgtcaataa

All links

Pathway (4)   
   KEGG PATHWAY (2)   
   KEGG MODULE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB-SPO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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