KEGG   Schizosaccharomyces pombe (fission yeast): SPCC18B5.10c
Entry
SPCC18B5.10c      CDS       T00076                                 
Name
(RefSeq) putative TREX complex subunit Tex1
  KO
K12880  THO complex subunit 3
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03013  Nucleocytoplasmic transport
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPCC18B5.10c
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPCC18B5.10c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPCC18B5.10c
   03041 Spliceosome [BR:spo03041]
    SPCC18B5.10c
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     SPCC18B5.10c
Spliceosome [BR:spo03041]
 Complex C
  Other components
   EJC/TREX
    SPCC18B5.10c
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SPCC18B5.10c
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A Cytochrom_D1 PROPPIN IKI3
Other DBs
NCBI-GeneID: 2539362
NCBI-ProteinID: NP_587940
PomBase: SPCC18B5.10c
Ensembl: SPCC18B5.10c
UniProt: Q9USL1
Position
III:complement(<738016..>739255)
AA seq 309 aa
MCASVTESLPKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKF
TTELGNRGYGLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWS
PSGNYCCASSRDDMLSFIDARERRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIME
WPSLKRVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIR
TLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN
SSGLKIFGL
NT seq 930 nt   +upstreamnt  +downstreamnt
atgtgtgcttcagttacagaatcgcttccaaagtttcccgaattgaaaactcgagattta
caagggcaacagggacctatacgttccctaggctggaatctttccggctcgagacttgcg
agttcttcatcttcaggatcagtacttgtttggaattcagatcgtttggattttaaattt
actactgaattagggaacagaggatatggtcttgtcgaacaactagtatgggatcctacg
cattctgatcggttaatggctgtgtatgctgggaaaatgatccgtttctgggactttaga
agcgccaaacctatcgctgaaatagaaagcaactatgagaatatttatgcaacctggagt
ccaagtggaaattactgctgtgctagtagtcgggatgatatgttgtcttttattgatgct
cgggaaagaagaataatggagacattccaacaaccttgtgagacaaatgaatgctgttgg
tcattcagtgaagatttgtttttcatgactacaggacttggcacggtgcaaattatggaa
tggccttctctaaaaagagtttacgatataaaggcgcataactcaaattgtttctgtatt
gaattcagtccggataacaggcaccttgccattggtggtgcagatgcaattactagttta
tgggatccacaagaactgatttgtgaacggtcgattactagaatggattatcccatccgt
acattaagctttagttatgacagtcgctatttagctagtggatcagaggaccgctatgtg
gatatcgctgatacgaaaactggtgatcaaatttggaaaattccaactaatggacctctg
aacaaggtagcttggcatccaacaaaacatattttagcatatgctgtatcggagcctaat
tctagtggtcttaagatatttgggctataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (49)   

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