KEGG S.pneumoniae_R6: spr1333

Streptococcus pneumoniae R6 (avirulent): spr1333

Entry

spr1333 CDS S.pneumoniae_R6

Gene name pgdA

Definition peptidoglycan GlcNAc deacetylase (EC:3.5.1.-)

Orthology K01463 [EC:3.5.1.-]

Class

SSDB

Motif Pfam: Polysacc_deac_1 DUF2681 GutM
PROSITE: PROTEIN_KINASE_ATP

Other DBs NCBI-GI: 15903376
NCBI-GeneID: 934547
UniProt: Q8DP63

Structure

PDB: 2C1I 2C1G

Position complement(1319730..1321121)

AA seq 463 aa
MNKSRLGRGRHGKTRHVLLALIGILAISICLLGGFIAFKIYQQKSFEQKIESLKKEKDDQ
LSEGNQKEHFRQGQAEVIAYYPLQGEKVISSVRELINQDVKDKLESKDNLVFYYTEQEES
GLKGVVNRNVTKQIYDLVAFKIEETEKTSLGKVHLTEDGQPFTLDQLFSDASKAKEQLIK
ELTSFIEDKKIEQDQSEQIVKNFSDQDLSAWNFDYKDSQIILYPSPVVENLEEIALPVSA
FFDVIQSSYLLEKDAALYQSYFDKKHQKVVALTFDDGPNPATTPQVLETLAKYDIKATFF
VLGKNVSGNEDLVKRIKSEGHVVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSS
KLMRPPYGAITDDIRNSLDLSFIMWDVDSLDWKSKNEASILTEIQHQVANGSIVLMHDIH
SPTVNALPRVIEYLKNQGYTFVTIPEMLNTRLKAHELYYSRDE

NT seq 1392 nt +upstreamnt +downstreamnt
atgaataaaagtagactaggacgtggcagacacgggaaaacgagacatgtattattggct
ttgattggtattttagcaatttctatttgcctattaggcggatttattgcttttaagatc
taccagcaaaaaagttttgagcaaaagattgaatcgctcaaaaaagagaaagatgatcaa
ttgagtgagggaaatcagaaggagcattttcgtcaggggcaagccgaagtgattgcctat
tatcctctccaaggggagaaagtgatttcctctgttagggagctgataaatcaagatgtt
aaggacaagctagaaagtaaggacaatcttgttttctactatacagagcaagaagagtca
ggtttaaagggagtcgttaatcgtaatgtgaccaaacaaatctatgatttagttgctttt
aagattgaagagactgaaaagaccagtctaggaaaggttcacttaacagaagatgggcaa
ccttttacacttgaccaactgttttcagatgctagtaaggctaaggaacagctgataaaa
gagttgacctccttcatagaggataaaaaaatagagcaagaccagagtgagcagattgta
aaaaacttctctgaccaagacttgtctgcatggaattttgattacaaggatagtcagatt
atcctttatccaagtcctgtggttgaaaatttagaagagatagccttgccagtatctgct
ttctttgatgttatccaatcttcgtacttactcgaaaaagatgcggccttgtaccaatct
tactttgataagaaacatcaaaaagttgtcgctctaacctttgatgatggtccaaatcca
gcaacgaccccgcaggtattagagaccctagctaaatatgatattaaagcgactttcttt
gtgcttgggaaaaatgtttctgggaatgaggacttggtgaagaggataaaatctgaaggt
catgttgttggaaaccatagctggagccatccgattctctcgcaactctctcttgatgaa
gctaaaaagcagattactgatactgaggatgtgctaactaaagtgctgggttctagttct
aaactcatgcgtccaccttatggtgctattacagatgatattcgcaatagcttggatttg
agctttatcatgtgggatgtggatagtctggactggaagagtaaaaatgaagcatctatt
ttgacagaaattcagcatcaagtagctaatggctctatcgttttgatgcatgatattcac
agtccgacagtcaatgccttgccaagggtcattgagtatttgaaaaatcaaggttatacc
tttgtgaccataccagagatgctcaatactcgcctaaaagctcatgagctgtactatagt
cgtgatgaataa

All links

Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (4)   
   Pfam (3)   
   PROSITE (1)   
All databases (16)

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