KEGG   Shewanella psychrophila: Sps_02117
Entry
Sps_02117         CDS       T05063                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
spsw  Shewanella psychrophila
Pathway
spsw03030  DNA replication
spsw03430  Mismatch repair
spsw03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:spsw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sps_02117
   03430 Mismatch repair
    Sps_02117
   03440 Homologous recombination
    Sps_02117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spsw03032]
    Sps_02117
   03400 DNA repair and recombination proteins [BR:spsw03400]
    Sps_02117
Enzymes [BR:spsw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Sps_02117
DNA replication proteins [BR:spsw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Sps_02117
DNA repair and recombination proteins [BR:spsw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Sps_02117
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: AQS37276
UniProt: A0A1S6HP26
Position
complement(2391043..2394516)
AA seq 1157 aa
MSDPSFVHLRVHSDFSMSDGLAKVKPILAKVSELGMPAVALTDQTNLCGLVKFYGACHGT
GIKPIIGADFWVKVPGFDKDLCSITVLAMDNDGYLNLTLLISDAYLRGHIDDRAVIDQDW
LAKYSKGLILLSGGRHGDIGRALLKGNQPQVDSLVDFYQTHFPDRYYLELLRTGRPDEET
YLHLAVALAEEKDLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADPRRPKKYSEQQYF
KSCEEMCELFEDIPEAIANTVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVKVSEDGL
EERLEFLFPDPEVRAEKRPEYDKRLDIELKVINQMGFPGYFLIVMEFIQWGKDQDIPIGP
GRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMVPAEPGMTLAKAFEVEPA
LQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDSEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKQKKLGKDPVRIESIPLDDHKSFKLL
QRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSFPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLKFNVDDEGNIVYGIGAIKG
VGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLICAGALDSLGPHRAAMMAT
LPEAVRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVQCTPWPDKVWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARNHFAS
AVEVDIDSDLVDETWLDSFKQVVEPWKKGAVPIIVNYAQPQAKAQFKLGDNWRVNPTDEL
MLALETLTGAGKVRILF
NT seq 3474 nt   +upstreamnt  +downstreamnt
atgtctgatcccagttttgtgcatctgcgcgtccacagcgatttttccatgtctgatggc
ctagccaaagtgaagcctatcttagctaaggtgtcagagcttggcatgccggctgttgcg
ttaaccgatcagactaacctatgtggtctagttaaattctatggtgcctgtcatggtacg
ggtataaagcccatcataggtgccgacttttgggttaaagtccctggtttcgacaaagat
ttatgttcgattactgtgttagccatggataatgatgggtatttgaatttaactttatta
atcagtgatgcttatctgaggggccatatcgatgatagagccgttatcgatcaagattgg
ctggctaaatatagtaagggactaatactactctcgggtggaagacacggagatattggc
agagcgcttctaaaagggaatcagcctcaagtcgattcattagtcgatttttatcagact
catttccctgaccgttattatctggaattgctccgcaccggacgccccgatgaggagact
tatttgcatctggcagtggcgctggctgaagagaaagatttacctgtagtggcaaccaat
caggtggtgtttaatagcccggaatttttcgatgctcatgagatccgtgtcgcaatttca
gatggttttaccttagccgatcctcgccgcccgaagaaatacagtgagcaacaatatttt
aagagctgcgaggagatgtgtgagctgttcgaagatattcctgaagcgattgctaataca
gtggagatcgccaagcgctgtaatgtaacagtacgcttgggtgagtatttcctgcctaac
ttccctacgggggatctctccatcgaagacttcttggttaaagtgtcagaagatggctta
gaggagcgcctggagtttctatttcccgatccagaggtgagggctgagaagcgtccggaa
tacgataagcgtctggatattgaacttaaagttatcaaccagatgggttttcctggctac
tttctcattgtgatggaatttattcagtggggaaaagatcaagatattccaatcggtccg
ggtcgcggctccggagcgggttccttagtggcttatgctcttaaaattaccgatctcgac
cctctggagtatgaactcttgtttgagcgtttcctcaaccctgaacgtgtttccatgccg
gattttgatatcgatttttgcatggacagacgagatgaagttatcgatcacgtagccgag
ctatatggtcgtgatgccgtatctcagatcatcaccttcggtaccatggctgccaaggcc
gttatacgagatgtggggagggtattaggccatccctatggcttcgtcgaccgtatctct
aaaatggtgcctgcagagcctggcatgactctggcaaaagccttcgaggtcgaacctgca
ttgcaggagtcttacgatgcagacgaggaggtcaaagatctcatcgacatgtgtcggatt
ttggaaggcgtgacgcgtaacgcgggtaagcatgcgggtggggtggtgatatcgcctacc
acaattaccgattttgctcccatctattgtgactcggaaggaaaaaacccggttacccag
ttcgataagaatgatgtcgagaccgcgggcctggtcaagtttgatttcctgggactgaga
accttgaccatcatcgactgggctttgcagatgatcaaccccaagcagaaaaaattgggc
aaagatcccgtgcgcatcgagtcgattcccctagatgatcataagagctttaaactgtta
cagcgctatgagactacggcggtattccagctggaatcccgtggtatgaaagatttgatc
aagcgtcttcaaccagatagcttcgaagatatgatcgctctggtggctttattccgtccg
ggcccacttcagtccggcatggtagataactttatcgagcgtaagcatggccgagaggaa
gtctctttcccagatgctgagtatcaacatgagtctctacaatgggtgcttgagcccacc
tatggcattattctttatcaagagcaggtaatgcagatcgctcaggttctcgctggttat
tcactcggtggtgcggatatgctacgtcgagccatgggtaagaagaaacccgaagagatg
gccaagcagcgtggtaccttcgaagagggagccatcaataacggtgtcgacggcgaactg
tcgatgaaaattttcgatttggtggagaagtttgcgggttacggatttaacaagtctcac
tcggctgcctatgcgctggtttcttatcagacactttggctaaagacccactatccggcc
gagtttatggcggcagttatgtcagctgatatggacaatacggacaagatcgtcattctg
gtggatgagtgtgaacgcatggggcaacctctgctgccaccggatgtaaacaagggcttg
ctgaaattcaatgtcgatgatgagggcaacatcgtctatggtatcggtgccatcaagggg
gtgggtgatggacccgttgagtcgatactggcagcgcgtaaggatggaccattcaaagat
cttttcgatttctgtgcccgagtcgaccttaaaaagttaaataaacgcattatggaaaag
ctcatctgtgccggtgccctggatagcttagggcctcatcgcgccgccatgatggcgaca
ttacccgaggctgtacgtgccgcagatcaaaatgctaaggctgaggcaataggccagcac
gatatgttcggtttgctcaatagtgatcctgaagacattaagcagcaatttgtccaatgt
accccttggccggataaggtctggcttgaaggtgagcgtgaaaccttaggcctctacctg
accggccacccgattaatcagtacctcaaagagctgaagcattacacatcgggtcgcctc
aaagatgtgcatcctaccgagcgtggcaagaccatgaaagccgctggtttggttattgcc
acgcgggtgatgatgaccaagcgtggttccaagatgggactggtgaccttggacgataag
agtgcccgcttggaagtgatgctgttcacagaggcgttcgagaagtttaaccatctgttg
gaaaaagatcgcatcttgatcatcgaaggagaggtcagtttcgatgatttctccggcggt
aaccgtatgacagccagaaatatcatagacatgggtgaggcgcgtaaccattttgctagt
gcagttgaggtggatattgacagtgacctagtcgatgaaacttggctagatagcttcaaa
caagtggtggaaccgtggaaaaagggcgcggttcccatcatagttaattatgctcaacca
caggctaaggcccagtttaagttgggggataactggagggtgaacccgacagatgaactc
atgttggcgctggaaaccttaaccggagccggcaaggtgaggatcttgttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system