KEGG T01019: 582203

Strongylocentrotus purpuratus (purple sea urchin): 582203

Entry

582203 CDS T01019

Gene name

lig4

Definition

ligase IV, DNA, ATP-dependent

Orthology

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

spu Strongylocentrotus purpuratus (purple sea urchin)

Pathway

spu03450

Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:spu03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT mRNA_cap_enzyme PTCB-BRCT

Other DBs

NCBI-GI:

390337384

NCBI-GeneID:

582203

Position

AA seq 929 aa
MASADQQPTSCTSTGASTEPEGPTVASQIPFVQLCGFLERVQKKKGSDAKKLLFKEFLEK
WREFHKAMHAKNPNTTDNFYPAMRLLLPQLERERMAYGIKEHTLAKFYIDIFGLAKESTD
AKKLLNYRAPTAKQEAGDFASVAFFVLRNRCPERGSLTIKDVNDSLDSIALNNATKKKDL
VKQSLLKLLRKTSAIEQKWFIRMIMKEMKVGLSQQSILGTFHPDAEDLFNVTNSLSKVCS
DLSSPSVRLNEIAISVFSPFSPMLGERAKITGVERMMEHKGFLIETKLDGERMQLHKEGD
KYMYFSRRSHDYSGSFGKSPMEGSLTPYIANCFNRDVHSCILDGEMCAYNSETKAFISKG
ENFDIKSLRDEEDVQVCYAVFDVLLVNDTKLANRPLKERLNYLPKVFTVIEGRMVLVERR
DASTKAEVVEALNEAIDKREEGIVVKHPESTYRPDKRKVVGLKIKPEYVDNLMDELDLLI
VGGYFGKGYRSQLISHFLCALAVPPSREGDHPKIFYSFCKVGSGYTLQELLDFNQKLAKH
WKKYDKENPPRWLQCTREKPELYVEPQHSFIVQVKATEINSSNVYRTGCTLRFPRLEKVR
DDKDWHQCMTTEEMENMRQQAEGKLTGRHVNVDDDEIVTTKRRKATSRAVIPVAVPSRFR
AADTSNVKQTSEMLEGRELCIMNSPASHPKDQLEKKIVECGGLVVQNPGIDTYCVLADKV
NLKVKNIFSAKIYDVVKTSWLIESLDAGRLLPWLPSHMLFTSAKMTAQFALDYDCHGDSY
TQDVNEEKLREVFANVEKKKSKQPMTAEQIAEIEMDYFPQDSLLGLFRLCRVYMDSCLVI
GEEDTHIKDCSLDLVSLEMRFHGATMCPMLDRQVTHIIVDKSDLSRVREFRLRGQKRALK
QHVVTSEWVRDCIQKEKFLSERPYEAAMS

NT seq 2790 nt +upstreamnt +downstreamnt
atggctagtgccgaccagcaacccacttcatgcacttctacaggagctagcacagagcca
gaggggccaaccgttgcaagccagatcccttttgtacagctttgtgggttcctagagaga
gtccagaagaagaaggggagcgatgcaaagaaactactcttcaaggaattcttagaaaaa
tggagagaattccacaaagcgatgcatgccaagaacccaaacacgacagataatttctat
ccagcaatgcgactactgttaccccaacttgagagagagagaatggcttatggcatcaaa
gagcacaccctagctaaattctatattgacatctttggtttagccaaagaaagcacggat
gccaagaaacttctaaactacagggctccaacagctaaacaggaagctggagactttgct
agtgttgctttctttgtcctgcgtaatagatgcccagagagaggaagcttgaccattaag
gatgtgaatgacagtcttgactctatcgctctcaacaatgctaccaagaagaaagacctg
gtcaagcaaagtttgttgaagttactcaggaaaaccagcgctatagaacaaaagtggttc
atacgtatgattatgaaggaaatgaaagttggtctcagtcagcagtctattcttggaacc
ttccatcctgatgcagaagacttgttcaatgttaccaacagtctctcaaaggtttgcagt
gatctgtctagcccgagtgtgagattgaatgagattgccatcagcgtgttcagtcctttc
agccctatgctgggtgaaagagccaaaataactggggttgagcgtatgatggagcacaaa
ggtttcctgattgaaaccaaactagatggagagagaatgcagcttcataaagaaggagac
aagtacatgtatttctcaagaaggtctcatgactattctggatcctttggtaagagccca
atggaagggagcttgacaccatacattgcaaactgcttcaatagagatgttcattcctgc
atattggatggtgagatgtgtgcctataattcagagaccaaagctttcatctcaaaggga
gaaaactttgacatcaaaagcctacgagatgaagaagatgttcaggtttgttatgctgtg
tttgatgtcctccttgtgaatgataccaaacttgcaaaccgccctctcaaggagagactc
aactacttaccaaaagtgtttactgtaattgaaggaagaatggtcttggtggaaaggaga
gatgcatctacaaaggcagaggttgtagaggcattgaatgaggctatagataaaagagaa
gaaggaatcgtcgttaagcatccagagtcaacttatcgacctgacaagagaaaagtggtt
gggttgaagatcaaacccgagtatgtcgacaatctgatggatgagttggaccttcttata
gtcggaggctactttggcaaagggtatcggtcgcagctcatctcacatttcctctgcgca
ctagctgttcctccaagcagggaaggagaccatcccaagatcttttactccttttgtaag
gtcggatcgggatacactttacaggagctcctagatttcaaccagaaacttgccaaacac
tggaagaagtatgacaaagagaacccacctagatggttacagtgcacaagggagaaacca
gagctctatgtggagccccagcattccttcatagttcaagtcaaagctaccgaaatcaac
tcatctaatgtgtacaggacaggatgtacactacgattccctcgtctggagaaggttaga
gacgataaggactggcaccagtgtatgaccacagaagagatggagaacatgagacagcaa
gcagagggcaagttaacaggaagacacgttaacgtggatgacgatgagatcgtgactact
aagagaagaaaagcaacatcaagagcagtaattccggttgctgtgccatcaaggttcaga
gctgcagacacttctaatgtcaaacagacgtctgaaatgctggagggacgagagctctgt
atcatgaacagtcctgcaagccatcctaaggatcagctagagaagaagatagtagagtgt
ggaggcttagtggttcagaacccaggtatagatacatactgtgtgctggcggacaaggtt
aacctcaaggtcaagaacatattcagtgccaagatatatgacgttgtgaagacttcatgg
ctcattgaaagcctggatgccggtcgcttattgccatggttaccatcccatatgctgttc
acctctgctaagatgacggctcagtttgccttggactatgactgtcatggagacagctat
acacaggacgtcaatgaagagaaactcagggaggtctttgcaaatgtggagaagaagaag
agtaagcagccaatgactgctgaacagatagccgagatagagatggactactttcctcaa
gactccctccttggtctctttcgtctgtgccgtgtctatatggattcatgccttgtcatt
ggggaggaggacacacacatcaaagattgctctcttgacctggtatccttggagatgagg
tttcatggcgccaccatgtgtcctatgctagacaggcaggtcactcacatcatcgtagac
aaaagtgacctgagcagagtgagagagttccgtctacgaggccagaagcgagccttgaag
cagcacgtagtcacctcagaatgggtcagggattgcatccagaaagagaaatttctcagt
gaaaggccctatgaagcagcaatgtcttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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